SustainPineDB

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Assembly info
Unigenes
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ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene12642

Length: 501 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene12642
GTTTCAGATGCTAAATTGGCATTGATACGACTTCTTTGGTGGCGTGATACAATAGATAATATTTATAAGAATAAACTCGTTGAGCATCCCATTGCACAGTCTTTAGCATCAATTATCCATGAGCATACACTAAGCAAACAGTGGTTTAAACGGTCCATTGAGGCACGGATTGCAGATTCAGAGACAGAAAGCACTCCGGTGACTCTTGCTGACTTAGAACAGTATTCAGAAAACACTGCTTCTGTCCTTTTGTACCTCACACTTCAGGCTGGGGGAATCCAGTCTACCGCCGCAGATCATGCTGCTTCCCATATTGGAAAAGCAAGTGGTCTTGTCCTCTTTCTCAGAGCCACAGCATATCATGCTAGTCGACGTCGGTCATACATTCCATACGATATCGCTGCTAAACATGGATTGTCACAAGAAGATATATACAGAGGAGAACACAGTGAAGCCCTGGAAAATGCCATGTTTGAAATAGCCTCAACTGCAAATGCACAT

Ace file of the UniGene biog2_v2.0_unigene12642 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11083	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[I] COG1562 Phytoene/squalene synthetase	-	-	4.0e-20	33%
FL-Next	tr=Putative uncharacterized protein; Ricinus communis (Castor bean).	-	-	0.0	58%
Blast2go	upf0551 protein c8orf38 mitochondrial-like	-	-	0.0	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	mitochondrion	GO:0005739	Cellular Component	0.0	71%

Source	InterPros	Term	Type	e value	Identity
Sma3	Squalene/phytoene synthase	IPR002060	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9RBP4

Fln msg: Distance to subject end: 69 aas, your sequence is shorter than subject: 167 - 351

Fln protein: VSDAKLALIRLLWWRDTIDNIYKNKLVEHPIAQSLASIIHEHTLSKQWFKRSIEARIADSETESTPVTLADLEQYSENTASVLLYLTLQAGGIQSTAADHAASHIGKASGLVLFLRATAYHASRRRSYIPYDIAAKHGLSQEDIYRGEHSEALENAMFEIASTANAH

Protein Length: 168

Fln nts: GTTTCAGATGCTAAATTGGCATTGATACGACTTCTTTGGTGGCGTGATACAATAGATAATATTTATAAGAATAAACTCGTTGAGCATCCCATTGCACAGTCTTTAGCATCAATTATCCATGAGCATACACTAAGCAAACAGTGGTTTAAACGGTCCATTGAGGCACGGATTGCAGATTCAGAGACAGAAAGCACTCCGGTGACTCTTGCTGACTTAGAACAGTATTCAGAAAACACTGCTTCTGTCCTTTTGTACCTCACACTTCAGGCTGGGGGAATCCAGTCTACCGCCGCAGATCATGCTGCTTCCCATATTGGAAAAGCAAGTGGTCTTGTCCTCTTTCTCAGAGCCACAGCATATCATGCTAGTCGACGTCGGTCATACATTCCATACGATATCGCTGCTAAACATGGATTGTCACAAGAAGATATATACAGAGGAGAACACAGTGAAGCCCTGGAAAATGCCATGTTTGAAATAGCCTCAACTGCAAATGCACAT

Fln Alignment:

biogeco2_mira_c9456___SDAKLALIRLLWWRDTIDNIYKNKLVEHPIAQSLASIIHEHTLSKQWFKRSIEARIADSETEST--PVTLADLEQYSENTASVLLYLTLQAGGIQSTAADHAASHIGKASGLVLFLRATAYHASRRR--SYIPYDIAAKHGLSQEDIYRGE----HSEALENAMFEIASTANAH
B9RBP4__________________SDPRIGLMRLLWWQETIDKIYANKLIEHPTAQALSSAISEYKITKGWLKRSVEARINDARREVTDIPETIEELEKYAEDTVSTILYMTLQAGGIRSTAADHAASHVGKASGLLLLLRSLPYHASRNRHFSYIPSEVAAKHGLLVKERGRPEIRIDSREGLCDTVFEIASVANVH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain