SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene12613

Length: 440 nt

UniGene Fasta

>biog2_v2.0_unigene12613
TTACATGGGGGAAATTCGGCAATTCGAATTGTCTGTGCCTTCAATCCGAACAGGATTGCGTATCAAGCTTTTGGTGATTCAGGAAAAGGATCTACGGGTTCGGATGGAGATACTGTCCCAACCCCTATGGTTTTAATAGACCAAAGTTCGGATCCCAATGCAACAATTGTGGAGATAAGTTTTGGTGATCGCCTTGGTGCTCTTCTTGACACGATGAGGGCACTCCAAGATCTTGGCCTGGATGTGACAAAAGCTAGTGTTTCCACAGAGGCATCAATTACTCGTACCAAGTTCTTCATAACACGATTGGACACTGGTCGCAAAGTTGAGGATCCTGAGTTGCTAGAAAAAATCCGCTTAACCATCATTAATAATTTGTTAACATATCACCCTGAAAGTAGTGAGCGGTTGGCTATGGGAGAAGCATTTGGGACAAAACC

Ace file of the UniGene biog2_v2.0_unigene12613

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene109	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Amino acid binding protein, putative n=1 Tax=Ricinus communis RepID=B9S5B3_RICCO	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	72%
Blast2go	act domain-containing protein	-	-	86%

Source	GOs	Term	Type	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	86%
Blast2go	amino acid binding	GO:0016597	Molecular Function	86%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	86%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	86%

Source	InterPros	Term	Type	e value	Identity
Sma3	Amino acid-binding ACT	IPR002912	-	0.0	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PQ23

Fln msg: Distance to subject end: 101 aas, your sequence is shorter than subject: 146 - 306

Fln protein: LHGGNSAIRIVCAFNPNRIAYQAFGDSGKGSTGSDGDTVPTPMVLIDQSSDPNATIVEISFGDRLGALLDTMRALQDLGLDVTKASVSTEASITRTKFFITRLDTGRKVEDPELLEKIRLTIINNLLTYHPESSERLAMGEAFGTK

Protein Length: 147

Fln nts: TTACATGGGGGAAATTCGGCAATTCGAATTGTCTGTGCCTTCAATCCGAACAGGATTGCGTATCAAGCTTTTGGTGATTCAGGAAAAGGATCTACGGGTTCGGATGGAGATACTGTCCCAACCCCTATGGTTTTAATAGACCAAAGTTCGGATCCCAATGCAACAATTGTGGAGATAAGTTTTGGTGATCGCCTTGGTGCTCTTCTTGACACGATGAGGGCACTCCAAGATCTTGGCCTGGATGTGACAAAAGCTAGTGTTTCCACAGAGGCATCAATTACTCGTACCAAGTTCTTCATAACACGATTGGACACTGGTCGCAAAGTTGAGGATCCTGAGTTGCTAGAAAAAATCCGCTTAACCATCATTAATAATTTGTTAACATATCACCCTGAAAGTAGTGAGCGGTTGGCTATGGGAGAAGCATTTGGGACAAAACC

Fln Alignment:

biogeco2_mira_c9420___VPTPMVLIDQSSDPNATIVEISFGDRLGALLDTMRALQDLGLDVTKASVSTEASITRTKFFITRLDTGRKVEDPELLEKIRLTIINNLLTYHPESSERLAMGEAFG
C0PQ23__________________VPIPKVAIDQDSDPNATVVEVTFGDRLGALLDTMEALRDLGLNVVKANVFLDSSGKHNTFSITRADTGRKVDDPEALEQIRLTIINNLLKYHPESSAQLAMGEAFG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain