SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene12596

Length: 243 nt

UniGene Fasta

>biog2_v2.0_unigene12596
ATATCATAGTTGAAGGAAGGTTAAGGACGGTATTCCACATCTGACTAAGGTTGGGGCCTATAGTGTGGATGTTAGTCTGGAGGGAAGTCTTATTCTTTGCAGGCAAGTTGATCAACCTGGCATGATTGGAAAAGTGGGAAGCATTCTAGGATCACAAAATGTCAATGTAAACTTTATGAGTGTTGGCAGAACTGCTCCTAGGAGGAGGGCTATCATGGCAATAGGGTAGGATGACGAACCGAC

Ace file of the UniGene biog2_v2.0_unigene12596

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15240	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	D-3-phosphoglycerate dehydrogenase, putative n=1 Tax=Ricinus communis RepID=B9RYA3_RICCO	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	80%
Blast2go	protein	-	-	90%

Source	GOs	Term	Type	Identity
Blast2go	megagametogenesis	GO:0009561	Biological Process	90%
Blast2go	ATP binding	GO:0005524	Molecular Function	90%
Blast2go	chloroplast	GO:0009507	Cellular Component	90%
Blast2go	membrane	GO:0016020	Cellular Component	90%
Blast2go	mitochondrion	GO:0005739	Cellular Component	90%

Source	InterPros	Term	Type	Identity
Sma3	Amino acid-binding ACT	IPR002912	-	-
Sma3	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain	IPR006139	-	-
Sma3	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding	IPR006140	-	-
Sma3	D-3-phosphoglycerate dehydrogenase	IPR006236	-	-
Sma3		IPR015508	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3		IPR017909	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NXI5

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 21 aas, your sequence is shorter than subject: 76 - 622

Fln protein: YHS*RKVKDGIPHLTKVGAYSVDVSLEGSLILCRQVDQPGMIGKVGSILGSQNVNVNFMSVGRTAPRRRAIMAIG*

Protein Length: 77

Fln nts: ATATCATAGTTGAAGGAAGGTTAAGGACGGTATTCCACATCTGACTAAGGTTGGGGCCTATAGTGTGGATGTTAGTCTGGAGGGAAGTCTTATTCTTTGCAGGCAAGTTGATCAACCTGGCATGATTGGAAAAGTGGGAAGCATTCTAGGATCACAAAATGTCAATGTAAACTTTATGAGTGTTGGCAGAACTGCTCCTAGGAGGAGGGCTATCATGGCAATAGGGTAGGATGACGAACCGAC

Fln Alignment:

biogeco2_mira_c9400___KVKDGIPHLTKVGAYSVDVSLEGSLILCRQVDQPGMIGKVGSILGSQNVNVNFMSVGRTAPRRRAIMAIG*DDEP
A9NXI5__________________KVKGGIPHLSKVGAFSVDVSLEGSVILCRQTDQPGMIGTVGNILGEENVNVNFMSVGRIAPRKKAVMAIGVDEEP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain