SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene12583

Length: 1055 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene12583

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15929	1/75
SustainPine v2.0	sp_v2.0_unigene16280	15/75
SustainPine v2.0	sp_v2.0_unigene60525	59/75

Source	Descriptions	Term	Type	Identity
AutoFact	60S ribosomal protein L6 n=3 Tax=Picea sitchensis RepID=A9NLS7_PICSI	-	-	90%
FL-Next	sp=60S ribosomal protein L6; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	60s ribosomal protein l6	-	-	85%

Source	GOs	Term	Type	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	85%
Blast2go	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	85%
Blast2go	chloroplast	GO:0009507	Cellular Component	85%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	85%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein L6, N-terminal	IPR005568	-	0.0	-
Sma3	Ribosomal protein L6E	IPR000915	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NLS7

Fln msg:

Fln protein: MAKSGQPRVSRNKDLIRGVGRFSRSKMYHKRGIWAIKEKNGGSFPRHDKQLPQPKAVEKAPKFYPAEDVPKPLTNKRKPKPTKLRSSITPGTVLILLAGRFKGKRVVFLKQLESGLLLITGPFKLNGVPIRRVNQAYVIATSTKIDISTVDVNKFTDKYFAKEVIRKKKTESEFFEAEKEDKKSLPVEKKEDQKVLDSVLLQILESVPDLKQYLSARFSLRSGMKPHELAF*

Protein Length: 233

Fln nts: ATGGGAGAGGCCTTTAGTCGAGAACGGAGCAGCTTGGGGAGAGATCGCAGCTGGGGGAGAGACGCAGGAAGAGGAACTGAAGAGGAAGAGAG_-_ATGGCGAAGTCTGGGCAGCCCAGGGTTTCAAGAAACAAAGACCTCATAAGAGGAGTTGGCCGTTTTTCCAGATCGAAAATGTATCACAAGAGAGGTATTTGGGCCATCAAGGAGAAGAACGGGGGCAGCTTCCCACGGCACGATAAACAACTCCCACAGCCGAAGGCTGTAGAAAAGGCTCCTAAATTTTATCCTGCGGAGGACGTGCCCAAGCCCCTCACTAACAAGAGGAAGCCTAAGCCCACGAAGCTCAGGTCCAGCATTACTCCTGGAACTGTTCTGATCCTTCTGGCTGGACGCTTCAAAGGGAAGCGTGTTGTCTTCCTAAAGCAGCTGGAGTCTGGTCTTTTGCTTATTACTGGCCCCTTTAAATTGAATGGTGTTCCAATCAGAAGGGTAAATCAAGCATATGTCATTGCAACCTCCACCAAGATTGATATAAGCACTGTTGATGTGAACAAATTCACAGACAAGTACTTTGCAAAGGAGGTTATTAGGAAGAAGAAGACCGAGAGTGAATTTTTTGAGGCAGAGAAAGAGGATAAAAAGTCCTTGCCTGTGGAGAAAAAGGAGGATCAGAAAGTTCTGGATTCTGTATTGTTGCAGATTCTAGAATCTGTTCCAGATTTGAAGCAGTATTTGTCTGCAAGATTTAGTTTGAGGTCAGGAATGAAGCCACATGAGCTTGCTTTTTAA___AAAACCGGCAAATCCAGAATTGGGGGCAGTTTGTACTGAACCACTCAATCAAAGGTGTTGGCTAGTGGAACTTTTATATATTTAGAAAATTTTGTTTCATTTCATTTGAAGCACACTACTAATTTTCAAGAGCGAGGGTTCTGTTAGGAGTCCCGTGTATTGTAGCTTTTATATTTGGGATTTATTGGTTTTGTTTACTCTTGTTTTCTTTTGACTTGTGATGGAAATCCATTTTCGTTTCGAATGAAATTTATATCCTTTCCAGTT

Fln Alignment:

biogeco2_mira_c9385___MAKSGQPRVSRNKDLIRGVGRFSRSKMYHKRGIWAIKEKNGGSFPRHDKQLPQPKAVEKAPKFYPAEDVPKPLTNKRKPKPTKLRSSITPGTVLILLAGRFKGKRVVFLKQLESGLLLITGPFKLNGVPIRRVNQAYVIATSTKIDISTVDVNKFTDKYFAKEVIRKKKTESEFFEAEKEDKKSLPVEKKEDQKVLDSVLLQILESVPDLKQYLSARFSLRSGMKPHELAF
A9NLS7__________________MAKSEKPRVSRNKELIRGVGRFSRSKMYHKRGIWALKEKNGGSFPRHDKQPPQAKAVEKAPKFYPADDEPKPLINKRKPKPTKLRSSITPGTVLILLAGRFKGKRVVFLKQLESGLLLVTGPFKLNGVPIRRVNQAYVIATSTKIDISTVDASKFTDKYFEKEVVRKKKTESEFFEAEKEDKKTLPTEKKEDQKVLDAVVLQAVESVPDLNQYLSSRFSLRSGMKPHELVF

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
820			66	33	0.997452
821			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain