SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene12578

Length: 575 nt

UniGene Fasta

>biog2_v2.0_unigene12578
ACATGAGCAACAGCAGGATTCAGCATTGTTCGCCCATCATGAAGTCTTGAATCCAAACCGTTTTGTAACTGATGAGCACAGCGACTTTATCAATTTGAGCCGCCAGCAAAGCTTACCCAGTGATCACAAATTTTCAGACTACCATGACCATTTACTGAACCTCAGGGATGATTGTCAGCTCCAAGATCATCTCTTCTATCCCACTGAGAATCTTGATTCCTACAGCCTACCAAATGATAGTCATGTCTATACAGAGATGCTCTCTTTCTTGAATGGAAGCAAGACAGGATTGAATCACAGGCGATCTTATTCCATGACAGACGTTTCTGTAAGCTGTGAGCCAGTTTCTTGGAAACCATGCCTGTATTTTGCCAGGGGATATTGCAAGCATGGCTCCAGCTGCCGTTTTACTCACAGTTATTCACGCTCTGACAACGTCTCGAGTTCAATTCCCTTGGATCCCCGCTTCGAAGAAGCTTTCTCTGTGGAATCATTGGAGAGATTAGAGTTAGAACTTCAAGAATTATTGAGAGGAAGACGGGCCCCTGTTTCCATTGCTTCCCTACCTCAACTCT

Ace file of the UniGene biog2_v2.0_unigene12578

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene21245	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	sp=Zinc finger CCCH domain-containing protein 53; Oryza sativa subsp. japonica (Rice).	-	-	37%
Blast2go	rna binding	-	-	62%

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Zinc finger, CCCH-type	IPR000571	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q0D3J9

Fln msg: Distance to subject end: 376 aas, your sequence is shorter than subject: 191 - 682

Fln protein: HEQQQDSALFAHHEVLNPNRFVTDEHSDFINLSRQQSLPSDHKFSDYHDHLLNLRDDCQLQDHLFYPTENLDSYSLPNDSHVYTEMLSFLNGSKTGLNHRRSYSMTDVSVSCEPVSWKPCLYFARGYCKHGSSCRFTHSYSRSDNVSSSIPLDPRFEEAFSVESLERLELELQELLRGRRAPVSIASLPQL

Protein Length: 192

Fln nts: ACATGAGCAACAGCAGGATTCAGCATTGTTCGCCCATCATGAAGTCTTGAATCCAAACCGTTTTGTAACTGATGAGCACAGCGACTTTATCAATTTGAGCCGCCAGCAAAGCTTACCCAGTGATCACAAATTTTCAGACTACCATGACCATTTACTGAACCTCAGGGATGATTGTCAGCTCCAAGATCATCTCTTCTATCCCACTGAGAATCTTGATTCCTACAGCCTACCAAATGATAGTCATGTCTATACAGAGATGCTCTCTTTCTTGAATGGAAGCAAGACAGGATTGAATCACAGGCGATCTTATTCCATGACAGACGTTTCTGTAAGCTGTGAGCCAGTTTCTTGGAAACCATGCCTGTATTTTGCCAGGGGATATTGCAAGCATGGCTCCAGCTGCCGTTTTACTCACAGTTATTCACGCTCTGACAACGTCTCGAGTTCAATTCCCTTGGATCCCCGCTTCGAAGAAGCTTTCTCTGTGGAATCATTGGAGAGATTAGAGTTAGAACTTCAAGAATTATTGAGAGGAAGACGGGCCCCTGTTTCCATTGCTTCCCTACCTCAACTCT

Fln Alignment:

biogeco2_mira_c9379___LRDDCQLQDHLFYPTEN--LDSYSLP------------NDSHVYTEMLSFLNGSKTGLNHRRSYSMTDVSVS-CEPVSWKPCLYFARGYCKHGSSCRFTH
Q0D3J9__________________LMDELQLQDQLAFLNEGGVPAGHQMPMFDGGECRSPGGGDGGLFSYNLGWANG---GPGHRRSASVSELCLGGADGLGWKPCLYYARGYCKNGSACRFVH

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain