SustainPineDB

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Assembly info
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene12573

Length: 432 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene12573
ATGGGGAATTTTATGAGGCAGGGTAGCTCTACTTCAGGGTTTTCCTCTCAGCTGAGTGACATGGGTTTGCCACAAGTTGTGGATAAGCTTAATATGCCCGTGGGCTCTTCCGCTGATAGCTTGGGTGGGAGCAGTTCAGATGATGGTAGTTAAGCAATGGCAATGGAGTCCAACGTTACATGTCAAGCTTCCGGGTTGGATCATGGGATGATACAGTGATAGTTTCTGAGGGTTTTGCAGGCATGCAAGATGGGGCAGCCTTTTCTGCGAGGAAGCGTGTAAGAGATCTGAATGGGAAAATGATGCCTGCTTTGAATCTAGCAGAGTCACAGAAGGGAGAGCCAAGTAGTCATGTTCCCATGGGATTAAATCATCAGTTCAGCCTAACCAAATCACCTTCCGAAATTGCAATGGAGAAGCTACTCCAGGACT

Ace file of the UniGene biog2_v2.0_unigene12573 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene36184	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Helix-loop-helix protein 1A n=1 Tax=Pinus taeda RepID=Q9SQ79_PINTA	-	-	54%
FL-Next	tr=Helix-loop-helix protein 1A; Pinus taeda (Loblolly pine).	-	-	46%
Blast2go	dna binding	-	-	69%

Source	InterPros	Term	Type	Identity
Sma3		IPR001092	-	-
Sma3	Helix-loop-helix DNA-binding	IPR011598	-	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q9SQ79

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 89 aas, your sequence is shorter than subject: 143 - 551

Fln protein: GEFYEAG*LYFRVFLSAE*HGFATSCG*A*YARGLFR**LGWEQFR*W*LSNGNGVQRYMSSFRVGSWDDTVIVSEGFAGMQDGAAFSARKRVRDLNGKMMPALNLAESQKGEPSSHVPMGLNHQFSLTKSPSEIAMEKLLQD

Protein Length: 144

Fln nts: ATGGGGAATTTTATGAGGCAGGGTAGCTCTACTTCAGGGTTTTCCTCTCAGCTGAGTGACATGGGTTTGCCACAAGTTGTGGATAAGCTTAATATGCCCGTGGGCTCTTCCGCTGATAGCTTGGGTGGGAGCAGTTCAGATGATGGTAGTTAAGCAATGGCAATGGAGTCCAACGTTACATGTCAAGCTTCCGGGTTGGATCATGGGATGATACAGTGATAGTTTCTGAGGGTTTTGCAGGCATGCAAGATGGGGCAGCCTTTTCTGCGAGGAAGCGTGTAAGAGATCTGAATGGGAAAATGATGCCTGCTTTGAATCTAGCAGAGTCACAGAAGGGAGAGCCAAGTAGTCATGTTCCCATGGGATTAAATCATCAGTTCAGCCTAACCAAATCACCTTCCGAAATTGCAATGGAGAAGCTACTCCAGGACT

Fln Alignment:

biogeco2_mira_c9368___LSNGNGVQRYMSSFRVGSWDDTVIVSEGFAGMQDGAAFSARKRVRDLNGKMMPALNLAESQKGEPSSHVPMGL-NHQFSLTKS-PSEIAMEKLLQD
Q9SQ79__________________LGSGNAGQGYISNFSVKSWDDEAMTPGNFAGMQNGANFTARKRAKELDMKLMQGLNNSDHQKVEGGIRGASALTNHPYNLPRSTSSELAMEEFLQD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain