SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene12552

Length: 293 nt

UniGene Fasta

>biog2_v2.0_unigene12552
ATATTGATGGATGCACTGATGACACAGTTGCTTTAAAGATTCAAAGACCTGCTTGCCCTTGGGAATTTATATGTATCGCCAACTCGATGAACGCATCGTTACAGACGAACGGTCAAGTTTTGGATCAGCATGGAAAGTACATTTATATTCTGATTGTAGTATTCTGGTCTGCGACTATTTAGAGCATGGGACTCTCCAGGATGTTATTAATTCGTATTTGGTAATTGGTCAGTGCATGGATGAGGTATTATGCATTTATTACACTATAGAAATGCTACGTATGTTGGAAACAT

Ace file of the UniGene biog2_v2.0_unigene12552

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10769	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	serine/threonine-prot (ISS) [Ostreococcus tauri] emb\|CAL57156.1\| serine/threonine-prot (ISS) [Ostreococcus tauri]	-	-	37%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	70%
Blast2go	mitotic checkpoint serine threonine-protein kinase bub1-like	-	-	70%

Source	GOs	Term	Type	Identity
Blast2go	phosphorylation	GO:0016310	Biological Process	70%
Blast2go	protein kinase activity	GO:0004672	Molecular Function	70%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	70%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Mad3/BUB1 homology region 1	IPR013212	-	-
Sma3	Mitotic checkpoint serine/threonine protein kinase, Bub1	IPR015661	-	-
Sma3	DNA ligase, ATP-dependent, conserved site	IPR016059	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: E0CTG3

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 188 aas, your sequence is shorter than subject: 97 - 552

Fln protein: Y*WMH**HSCFKDSKTCLPLGIYMYRQLDERIVTDERSSFGSAWKVHLYSDCSILVCDYLEHGTLQDVINSYLVIGQCMDEVLCIYYTIEMLRMLET

Protein Length: 98

Fln nts: ATATTGATGGATGCACTGATGACACAGTTGCTTTAAAGATTCAAAGACCTGCTTGCCCTTGGGAATTTATATGTATCGCCAACTCGATGAACGCATCGTTACAGACGAACGGTCAAGTTTTGGATCAGCATGGAAAGTACATTTATATTCTGATTGTAGTATTCTGGTCTGCGACTATTTAGAGCATGGGACTCTCCAGGATGTTATTAATTCGTATTTGGTAATTGGTCAGTGCATGGATGAGGTATTATGCATTTATTACACTATAGAAATGCTACGTATGTTGGAAACAT

Fln Alignment:

biogeco2_mira_c9345___KDSKTCLPLGIYMYRQLDERIVTDERSSFGSAWKVHLYSDCSILVCDYLEHGTLQDVINSYLVIGQCMDEVLCIYYTIEMLRMLET
E0CTG3__________________KIQKPAFPWEFYMYRQLDKRIPDKERSSFGFAHRLHLYSDCSILVSEYLAHGTLQDAINSYVVIGGSMEEVLCIYYTIEMLYMLET

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain