SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene12545

Length: 491 nt

UniGene Fasta

>biog2_v2.0_unigene12545
GACGGTTTGTTGGTCATGGTGTGGGGAAGATTTTCATTCGGAACCAGTTATTTTTCATTTTCGTAATGATAACCCAGGCTGCATGGTGGCAGGTCAAACTTTCACAATAGAACCTATACTGGTAATGGGGAGCACTGATTGCATTGTCTGGAGAGATAATTGGACTACAGTCACCGCTGATGGCAGTTTGGCTGCACAGTTTGAGCATACCATCCTTATAACGGAGACTGGAGCGGAGATATTAACTAAGTGCTGAGGACTAGAACCAGCAAACATATTTTTACCTTTCAAAATGTACAAGAAAATCTCTGCTTAGCCCAAGTTCTTTATTTTTCTTTGCTGATAATTTCTTGATGGTTATTGGATTAACAGTCTCTTTGTATAATATAATCCCAGTCATTGGCCTCATTCAATGAGAATTTAAGTCATTTCTCTATAGAGGTACAATCGGTACCATCACAAGCTTACACTGGCTCAGCTTTAATTCAGTA

Ace file of the UniGene biog2_v2.0_unigene12545

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene24915	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Methionine aminopeptidase n=1 Tax=Picea sitchensis RepID=D5AA02_PICSI	-	-	94%
FL-Next	sp=Methionine aminopeptidase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	methionine aminopeptidase 1b	-	-	86%

Source	GOs	Term	Type	e value	Identity
Blast2go	hydrolase activity	GO:0016787	Molecular Function	0.0	86%
Blast2go	chloroplast	GO:0009507	Cellular Component	0.0	86%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase M24, structural domain	IPR000994	-	-
Sma3	Peptidase M24, methionine aminopeptidase	IPR001714	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Peptidase M24A, methionine aminopeptidase, subfamily 1	IPR002467	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AA02

Fln msg: your sequence is shorter than subject: 85 - 358

Fln protein: TVCWSWCGEDFHSEPVIFHFRNDNPGCMVAGQTFTIEPILVMGSTDCIVWRDNWTTVTADGSLAAQFEHTILITETGAEILTKC*

Protein Length: 86

Fln nts: GACGGTTTGTTGGTCATGGTGTGGGGAAGATTTTCATTCGGAACCAGTTATTTTTCATTTTCGTAATGATAACCCAGGCTGCATGGTGGCAGGTCAAACTTTCACAATAGAACCTATACTGGTAATGGGGAGCACTGATTGCATTGTCTGGAGAGATAATTGGACTACAGTCACCGCTGATGGCAGTTTGGCTGCACAGTTTGAGCATACCATCCTTATAACGGAGACTGGAGCGGAGATATTAACTAAGTGCTGA___GGACTAGAACCAGCAAACATATTTTTACCTTTCAAAATGTACAAGAAAATCTCTGCTTAGCCCAAGTTCTTTATTTTTCTTTGCTGATAATTTCTTGATGGTTATTGGATTAACAGTCTCTTTGTATAATATAATCCCAGTCATTGGCCTCATTCAATGAGAATTTAAGTCATTTCTCTATAGAGGTACAATCGGTACCATCACAAGCTTACACTGGCTCAGCTTTAATTCAGTA

Fln Alignment:

biogeco2_mira_c9338___GEDFHSEPVIFHFRNDNPGCMVAGQTFTIEPILVMGSTDCIVWRDNWTTVTADGSLAAQFEHTILITETGAEILTKC
D5AA02__________________GKIFHSEPVIFHFRNDKPGCMVAGQTFTIEPILIMGSTDCIVWKDNWTTVTVDGSLAAQFEHTILITEIGAEILTKC

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain