SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene12514

Length: 566 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene12514
CACAGCCATGTTCGATGTGACAGAGAAACTCAGCATACCCACGTACGTTTTCTTAACTTCGACTGCTTCTCTACTTTCTCTCATGTTCTCTATTCCGAAGATCGTCTCGGAGATTCCAATTTCGTTCAAGGACGCCGATTTTCCAGTAGAGGTGCCTGGCCTACCGCCGATCTCGAGCACGGATATGCCTACTCCTCTGCAGGACAGGTCGGATGAAGCCTTCTTCTGGTTCGTGCACCATTTCTCGCGCCTTCGTGAAATAAAGGGGGTTTTGATAAACACCTTCGAGGAGCTAGAGCCTGGACCAATCAAAGCCCTTGTGGAGGGAAATATACCTATTAATCCCACTTTTGGGGATCTAATATCCCGCGTTTATCCAGTTGGGCCCGTCATATCCTCGTCGCCATTTGAATCCCGTGACAAATTTCTCCAGGATGGGCAGGTGGATTGCCTCAAGTGGTTAGACAATCAACCGCCTTCGTCAGTTCTCTTCGTTTCCTTTGGCAGCGGAGGCGTCCTGCCCAAGGCACAGGTTACCGAACTCGCCCTGGGGCTAGAAGCGAGCC

Ace file of the UniGene biog2_v2.0_unigene12514 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene29304	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	hydroquinone glucosyltransferase [Arabidopsis thaliana] sp\|Q9M156.1\|U72B1_ARATH RecName: Full=UDP-glycosyltransferase 72B1; AltName: Full=Arbutin synthase; AltName: Full=Probable hydroquinone glucosyltransferase pdb\|2VCE\|A Chain A, Characterization And En	-	-	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	hydroquinone glucosyltransferase	-	-	61%

Source	GOs	Term	Type	Identity
Blast2go	response to salt stress	GO:0009651	Biological Process	61%
Blast2go	xenobiotic catabolic process	GO:0042178	Biological Process	61%
Blast2go	response to toxin	GO:0009636	Biological Process	61%
Blast2go	UDP-glucosyltransferase activity	GO:0035251	Molecular Function	61%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PT89

Fln msg: Distance to subject end: 181 aas, your sequence is shorter than subject: 188 - 490

Fln protein: TAMFDVTEKLSIPTYVFLTSTASLLSLMFSIPKIVSEIPISFKDADFPVEVPGLPPISSTDMPTPLQDRSDEAFFWFVHHFSRLREIKGVLINTFEELEPGPIKALVEGNIPINPTFGDLISRVYPVGPVISSSPFESRDKFLQDGQVDCLKWLDNQPPSSVLFVSFGSGGVLPKAQVTELALGLEAS

Protein Length: 189

Fln nts: CACAGCCATGTTCGATGTGACAGAGAAACTCAGCATACCCACGTACGTTTTCTTAACTTCGACTGCTTCTCTACTTTCTCTCATGTTCTCTATTCCGAAGATCGTCTCGGAGATTCCAATTTCGTTCAAGGACGCCGATTTTCCAGTAGAGGTGCCTGGCCTACCGCCGATCTCGAGCACGGATATGCCTACTCCTCTGCAGGACAGGTCGGATGAAGCCTTCTTCTGGTTCGTGCACCATTTCTCGCGCCTTCGTGAAATAAAGGGGGTTTTGATAAACACCTTCGAGGAGCTAGAGCCTGGACCAATCAAAGCCCTTGTGGAGGGAAATATACCTATTAATCCCACTTTTGGGGATCTAATATCCCGCGTTTATCCAGTTGGGCCCGTCATATCCTCGTCGCCATTTGAATCCCGTGACAAATTTCTCCAGGATGGGCAGGTGGATTGCCTCAAGTGGTTAGACAATCAACCGCCTTCGTCAGTTCTCTTCGTTTCCTTTGGCAGCGGAGGCGTCCTGCCCAAGGCACAGGTTACCGAACTCGCCCTGGGGCTAGAAGCGAGCC

Fln Alignment:

biogeco2_mira_c9301___TAMFDVTEKLSIPTYVFLTSTASLLSLMFSIPKIVSEIPISFKDADFPVEVPGLPPISSTDMPTPLQDRSDEAFFWFVHHFSRLREIKGVLINTFEELEPGPIKALVEGNIPINPTFGDLISRVYPVGPVISSSPFESRDKFLQDGQVDCLKWLDNQPPXXXXXXXXXXXXXLPKAQVTELALGLEAS
C0PT89__________________SAMFDVTAKLCIPTYVFLTSPASLLSLMLSIPKLVSEIPISFKDADFPVEVPGLPPISSRDLPTPLQDRSDEAFFWFVHHFSRLREIKGVLLNTFEELETEPIKTLVEGTI-FNPTDGHRIPRVYPVGPVISSSPLESRDKLLQDRRVDCLKWLDNQPPSSVLFVSFGSGGALPEAQVTELALGLEAS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain