SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene12496

Length: 516 nt

UniGene Fasta

>biog2_v2.0_unigene12496
TAATCATAAATGTTGAAGATGCAGATCAGTGGGTGGATTATATTGAAAATGCAGGTTCTGTATTCATAGGAAGGTGGAGTCCTGAGAGCGTTGGGGACTATGCGAGTGGCACAAATCATGTGCTTCCTACTTACGGATATGCAAGGATGTATGGAGGTGTATCGTTGGATTCCTTCATGAAGTATATCACTGTGCAATCCTTGACAGAGGAAGGCCTGAAAACTCTTGGTCCACATGTTGTTAAGATGGCAGAGGTAGAAGGTTTGGAGGCTCATAAGAGAGCAGTGACATTGCGGTTGCAAGATATTGAAACAAGATCATCGGTTTGAGACTTTAGCATGATGTCAGGGTATCCATTTCTCCACGGTGATTTAGGAAAGTTTGAAAATTATCCTCCGTTATTCAAAGTTGATGACATGATTTTTTCAAGCGGTGGAAATCTTCTGAATTAGAGTTCTACCAAGTTTCTGGTGCATATTTCTTGATATAATCTTACAAATCAGCATTGATGAATAC

Ace file of the UniGene biog2_v2.0_unigene12496

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18516	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Histidinol dehydrogenase n=1 Tax=Picea sitchensis RepID=A9NV24_PICSI	-	-	90%
FL-Next	sp=Histidinol dehydrogenase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	histidinol dehydrogenase	-	-	88%

Source	GOs	Term	Type	Identity
Blast2go	response to UV	GO:0009411	Biological Process	88%
Blast2go	pollen development	GO:0009555	Biological Process	88%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	88%

Source	InterPros	Term	Type	e value	Identity
Sma3	Histidinol dehydrogenase, conserved site	IPR001692	-	0.0	-
Sma3	Histidinol dehydrogenase	IPR012131	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NV24

Fln msg: your sequence is shorter than subject: 109 - 491

Fln protein: IINVEDADQWVDYIENAGSVFIGRWSPESVGDYASGTNHVLPTYGYARMYGGVSLDSFMKYITVQSLTEEGLKTLGPHVVKMAEVEGLEAHKRAVTLRLQDIETRSSV*

Protein Length: 110

Fln nts: TAATCATAAATGTTGAAGATGCAGATCAGTGGGTGGATTATATTGAAAATGCAGGTTCTGTATTCATAGGAAGGTGGAGTCCTGAGAGCGTTGGGGACTATGCGAGTGGCACAAATCATGTGCTTCCTACTTACGGATATGCAAGGATGTATGGAGGTGTATCGTTGGATTCCTTCATGAAGTATATCACTGTGCAATCCTTGACAGAGGAAGGCCTGAAAACTCTTGGTCCACATGTTGTTAAGATGGCAGAGGTAGAAGGTTTGGAGGCTCATAAGAGAGCAGTGACATTGCGGTTGCAAGATATTGAAACAAGATCATCGGTTTGA___GACTTTAGCATGATGTCAGGGTATCCATTTCTCCACGGTGATTTAGGAAAGTTTGAAAATTATCCTCCGTTATTCAAAGTTGATGACATGATTTTTTCAAGCGGTGGAAATCTTCTGAATTAGAGTTCTACCAAGTTTCTGGTGCATATTTCTTGATATAATCTTACAAATCAGCATTGATGAATAC

Fln Alignment:

biogeco2_mira_c9281___IINVEDADQWVDYIENAGSVFIGRWSPESVGDYASGTNHVLPTYGYARMYGGVSLDSFMKYITVQSLTEEGLKTLGPHVVKMAEVEGLEAHKRAVTLRLQDIETRSSV
A9NV24__________________IINVEDADQWVDYIENAGSVFLGRWSPESIGDYASGTNHVLPTYGYARMYGGVSLDSFMKYITVQSLTEEGLKSLGPHVVKMAEVEGLEAHKRAVTLRLQDIETRSSV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain