SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene12492

Length: 428 nt

UniGene Fasta

>biog2_v2.0_unigene12492
AGAACCCTTACTTGCTGCGTTGTCTGGCCACACAACAATAGAAACAGCAAGAGAGAACGCTATGCAAGAAGTTAGAAAACATTTCAGACCTGAGCTGTTTAACAGATTCGATGAGATAGTTGTATTTAATACTCTCCTTCATGATCAGCTACAAAAAAGTTGTTAGACTACAGTTGAAAGATGTAGAGATTCGTCTTGCTGAGAGAGGTATCGCATTAGAAGTAACAGATGCAGCTTTGGATTTTATTCTTCGGAAAGGCTATGATCCTGTCTATGGTGCTCGTCCCTTACGGCGATGGATAGAAGGAAATGTTGTCTCTCAGCTGTCTTTGATGCTCCTGAGAGAGGAGATTGATGAGACCAGTAAAGTATATATTGATGCAATGCCTGAAGAAGAGACATTATCTTATCGCGTAGAGGACAGGAGT

Ace file of the UniGene biog2_v2.0_unigene12492

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10695	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	Chaperone clpb, putative n=1 Tax=Ricinus communis RepID=B9RLP7_RICCO	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	73%
Blast2go	heat shock protein	-	-	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	Nucleoside-triphosphatase.	EC:3.6.1.15	-	0.0	81%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	81%
Blast2go	Thiamine metabolism	00730	81%
Blast2go	Metabolic pathways	01100	81%

Source	GOs	Term	Type	Identity
Blast2go	protein metabolic process	GO:0019538	Biological Process	81%
Blast2go	response to stress	GO:0006950	Biological Process	81%
Blast2go	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	81%
Blast2go	ATP binding	GO:0005524	Molecular Function	81%

Source	InterPros	Term	Type	Identity
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Chaperonin ClpA/B	IPR001270	-	-
Sma3	UVR domain	IPR001943	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	Clp, N-terminal	IPR004176	-	-
Sma3	ATPase, AAA-2	IPR013093	-	-
Sma3	Chaperonin ClpB	IPR017730	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	Chaperonin ClpA/B, conserved site	IPR018368	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NQA7

Fln msg: Overlapping hits, possible frame ERROR between 157 and 153, Distance to subject end: 47 aas, your sequence is shorter than subject: 143 - 278

Fln protein: EPLLAALSGHTTIETARENAMQEVRKHFRPELFNRFDEIVVFNTLLHDQLxxxVVRLQLKDVEIRLAERGIALEVTDAALDFILRKGYDPVYGARPLRRWIEGNVVSQLSLMLLREEIDETSKVYIDAMPEEETLSYRVEDRS

Protein Length: 144

Fln nts: AGAACCCTTACTTGCTGCGTTGTCTGGCCACACAACAATAGAAACAGCAAGAGAGAACGCTATGCAAGAAGTTAGAAAACATTTCAGACCTGAGCTGTTTAACAGATTCGATGAGATAGTTGTATTTAATACTCTCCTTCATGATCAGCTAxxxxxxxxxGTTGTTAGACTACAGTTGAAAGATGTAGAGATTCGTCTTGCTGAGAGAGGTATCGCATTAGAAGTAACAGATGCAGCTTTGGATTTTATTCTTCGGAAAGGCTATGATCCTGTCTATGGTGCTCGTCCCTTACGGCGATGGATAGAAGGAAATGTTGTCTCTCAGCTGTCTTTGATGCTCCTGAGAGAGGAGATTGATGAGACCAGTAAAGTATATATTGATGCAATGCCTGAAGAAGAGACATTATCTTATCGCGTAGAGGACAGGAGT

Fln Alignment:

biogeco2_mira_c9275___EPLLAALSGHTTIETARENAMQEVRKHFRPELFNRFDEIVVFNTLLHDQLxxVVRLQLKDVEIRLAERGIALEVTDAALDFILRKGYDPVYGARPLRRWIEGNVVSQLSLMLLREEIDETSKVYIDAMPEEETLSYRVE
A9NQA7__________________EHLLAALTGHVTIKTARENVMQEVKRHFRPELLNRLDEIVVFDPLSHDELxxVARLQMKDVAIRLAERGVALGVTDAALDLVLREAYDPVYGARPLRRWLERKVVTQLSRMLISGEIDENSTVYIDAMPGQQKLSYRVD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain