SustainPineDB

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Assembly info
Unigenes
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SSRs
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GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene12488

Length: 417 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene12488
AGGCAATGACGGCTCAGAAGCACATTGTAAGGGACGTGTTTGTTATTCTGCTCTGCGCCACGGTTATTATACTTACTGTGTCAGCCCTTGTGCACAAGGCAGCCACGGCATTTAACCCATCTCTTCCGAATGGCATTTCGCAGACAGTCAATATACTCTTTTGCCCAAGGCTGTTGAAGACAACAGAGCTACTGCTTTCCACCCTTTGCCTTCGGAAATTGATGTGCCTTTCCCAAAGTCTCCTGATTCCAACAAAACGGAGATCCTTTCCGGGACAGCAGCATTACAAAGTATATCAGCACCTGTTCCAGCTCCACATCAAGACGAATTAAATGTGGTTTTACCTCCAGCTCCAACTCAAGATAAACTAGGTGTGGTTTTAAGTCCACCTGCCCCTCAAGATGAACTAGATAGAGT

Ace file of the UniGene biog2_v2.0_unigene12488 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17645	1/2
SustainPine v2.0	sp_v2.0_unigene23306	1/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Nucleotid_trans domain containing protein	-	-	9.0e-33	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Blast2go	uncharacterized protein at4g15970-like	-	-	0.0	67%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Transposase, IS1	IPR005063	-	-
Sma3	Nucleotide-diphospho-sugar transferase	IPR005069	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3	Myb DNA-binding domain, plants	IPR006447	-	-
Sma3		IPR012287	-	-
Sma3		IPR014778	-	-
Sma3		IPR015706	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-
Sma3	DNA-directed DNA polymerase, family B, conserved site	IPR017964	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLR9

Fln msg: Overlapping hits, possible frame ERROR between 167 and 164, Distance to subject end: 277 aas, atg_distance in limit (1-15): atg_distance = 7, your sequence is shorter than subject: 137 - 422

Fln protein: MTAQKHIVRDVFVILLCATVIILTVSALVHKAATAFNPSLPNGISQTVNILFxxxAVEDNRATAFHPLPSEIDVPFPKSPDSNKTEILSGTAALQSISAPVPAPHQDELNVVLPPAPTQDKLGVVLSPPAPQDELDR

Protein Length: 138

Fln nts: AGGCA_-_ATGACGGCTCAGAAGCACATTGTAAGGGACGTGTTTGTTATTCTGCTCTGCGCCACGGTTATTATACTTACTGTGTCAGCCCTTGTGCACAAGGCAGCCACGGCATTTAACCCATCTCTTCCGAATGGCATTTCGCAGACAGTCAATATACTCTTTxxxxxxxxxGCTGTTGAAGACAACAGAGCTACTGCTTTCCACCCTTTGCCTTCGGAAATTGATGTGCCTTTCCCAAAGTCTCCTGATTCCAACAAAACGGAGATCCTTTCCGGGACAGCAGCATTACAAAGTATATCAGCACCTGTTCCAGCTCCACATCAAGACGAATTAAATGTGGTTTTACCTCCAGCTCCAACTCAAGATAAACTAGGTGTGGTTTTAAGTCCACCTGCCCCTCAAGATGAACTAGATAGAGT

Fln Alignment:

biogeco2_mira_c9270___AMTAQKHIVRDVFVILLCATVIILTVSALVHKAATAFNPSLPNGISQTVNILFCxKAVEDNRATAFHPLPSEIDVPFPKSPDSNKTEILSGTAALQSISAPVPAPHQDELNVVLPPAPTQDKLGVVLSPPAPQDELDR
B8LLR9__________________AMTAQKHIVRDVFVVLLCATFIILAVSAIVHKAATAFNPFLPDGISQRVNIFFSxKVVEDSRATTFQPLPSAIDVPSQRSPDSNRTEILAGAGSLQGVPVPAPASYPDELDVVLAPAPAPDKLDKVLLPAAPEDELDR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain