SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene12484

Length: 360 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene12484
CAGTCAATCTATCGAAAGTATGATCCACAATGAAGGTGAGCGTATAGCAACACGTGAGATTTTGACTGATAAGGGTCTATCTGCGCAAGGAGATTCAGAGAGATTGGGAGTCTCGTCCGAGATATTCCGCCTTGAATTGAGCGATCCACAGATACGAGAATGGCATGCACGCTTGGAACCGCTTGTGCTTCTTTTCGTTGAAGGAAGCCAACCTATAGAGCAAGATGACCCAAAATGGGAAATGTATATCAGGGTCCAGAGGGAGTCATTGAGTGGAGGCAGTGCGGTGTGTAGATTATTGGGATTCTGTACTGTTTACCGTTTCTATCATTATCCAGACACCACCCGTCTAAGAATTAG

Ace file of the UniGene biog2_v2.0_unigene12484 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2632	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	histone acetyltransferase type B catalytic subunit [Arabidopsis thaliana] sp\|Q9FJT8.1\|HATB_ARATH RecName: Full=Histone acetyltransferase type B catalytic subunit; Short=HAT B dbj\|BAB09892.1\| histone acetyltransferase HAT B [Arabidopsis thaliana] gb\|ABF572	-	-	38%
FL-Next	sp=Histone acetyltransferase type B catalytic subunit; Arabidopsis thaliana (Mouse-ear cress).	-	-	40%
Blast2go	histone acetyltransferase type b catalytic subunit	-	-	58%

Source	GOs	Term	Type	Identity
Blast2go	histone H4 acetylation	GO:0043967	Biological Process	58%
Blast2go	H4 histone acetyltransferase activity	GO:0010485	Molecular Function	58%
Blast2go	nucleus	GO:0005634	Cellular Component	58%

Source	InterPros	Term	Type	Identity
Sma3	GNAT domain	IPR000182	-	-
Sma3	Acyl-CoA N-acyltransferase	IPR016181	-	-
Sma3	Histone acetyltransferase type B, catalytic subunit	IPR017380	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9FJT8

Fln msg: Distance to subject end: 220 aas, your sequence is shorter than subject: 119 - 467

Fln protein: SQSIESMIHNEGERIATREILTDKGLSAQGDSERLGVSSEIFRLELSDPQIREWHARLEPLVLLFVEGSQPIEQDDPKWEMYIRVQRESLSGGSAVCRLLGFCTVYRFYHYPDTTRLRI

Protein Length: 120

Fln nts: CAGTCAATCTATCGAAAGTATGATCCACAATGAAGGTGAGCGTATAGCAACACGTGAGATTTTGACTGATAAGGGTCTATCTGCGCAAGGAGATTCAGAGAGATTGGGAGTCTCGTCCGAGATATTCCGCCTTGAATTGAGCGATCCACAGATACGAGAATGGCATGCACGCTTGGAACCGCTTGTGCTTCTTTTCGTTGAAGGAAGCCAACCTATAGAGCAAGATGACCCAAAATGGGAAATGTATATCAGGGTCCAGAGGGAGTCATTGAGTGGAGGCAGTGCGGTGTGTAGATTATTGGGATTCTGTACTGTTTACCGTTTCTATCATTATCCAGACACCACCCGTCTAAGAATTAG

Fln Alignment:

biogeco2_mira_c9262___EIFRLELSDPQIREWHARLEPLVLLFVEGSQPIEQDDPKWEMYIRVQRESLSGGSAVCRLLGFCTVYRFYHYPDTTRLRI
Q9FJT8__________________QVIRMEIGSPNAGLLYSRLVPLVLLFVDGSNPIDVTDPDWHLYLLIQKKE-EKEDPLYRIVGFTAIYKFYRYPDRLRMRL

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain