SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene12393

Length: 259 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene12393
AATCTTGTTATTAAGACAGTCAAGCATTGAAGCCATGGGAAAATTTGGGTATTTGGGCCTGGTAGGGTTTATAGTGCTTTTCCAATTGATACACCGAATTTCTTCTCAGCCTGCTGTGAAAGAGGATGATATTCGGTGCCTTAATATTACTCACAATCAATTGAAGGACCCTCAAGATAATCTCTACAGCTGGAAATTTGACAGCAGCGGCCACGGTTTTACTTGCAATTTCCTGGGAATTACTTGCTGGCACAACGAT

Ace file of the UniGene biog2_v2.0_unigene12393 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16908	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1, putative n=1 Tax=Ricinus communis RepID=B9RUI5_RICCO	-	-	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	64%
Blast2go	protein	-	-	66%

Source	GOs	Term	Type	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	66%
Blast2go	plasma membrane	GO:0005886	Cellular Component	66%
Blast2go	chloroplast	GO:0009507	Cellular Component	66%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LM41

Fln msg: Distance to subject end: 537 aas, your sequence is shorter than subject: 75 - 613

Fln protein: MGKFGYLGLVGFIVLFQLIHRISSQPAVKEDDIRCLNITHNQLKDPQDNLYSWKFDSSGHGFTCNFLGITCWHND

Protein Length: 76

Fln nts: AATCTTGTTATTAAGACAGTCAAGCATTGAAGCC_-_ATGGGAAAATTTGGGTATTTGGGCCTGGTAGGGTTTATAGTGCTTTTCCAATTGATACACCGAATTTCTTCTCAGCCTGCTGTGAAAGAGGATGATATTCGGTGCCTTAATATTACTCACAATCAATTGAAGGACCCTCAAGATAATCTCTACAGCTGGAAATTTGACAGCAGCGGCCACGGTTTTACTTGCAATTTCCTGGGAATTACTTGCTGGCACAACGAT

Fln Alignment:

biogeco2_mira_c9153___MGKFGYLGLVGFIVLF-QLIHRISSQPAVKEDDIRCLNITHNQLKDPQDNLYSWKFDSSGHGFTCNFLGITCWHND
B8LM41__________________MRKFGCLSLLGVMLLILQLTCPVSSQPSVAENDIQCLQSTKNHLKDPQDNLYTWNFDNSTKGFICNFLGITCWHND

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain