SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene12383

Length: 466 nt

UniGene Fasta

>biog2_v2.0_unigene12383
CTTGAATAGAGTAGACATGGTCTCAACTGCAGACAAGAATGCATGGGCTACATATTTCTCATGACAGGGTTTAACAGTAGTCTTGGCCAATGGCCAGCTTGGAATGGAGACGATGAAGTTGGCAAGAGTGGAAAAATCATTAGCTAGTAATGTGAACAACAAGCGTAGGGCCAAAGGACTTCTTCCTCGTGCGATTAAAGCAGATCAGAGCAGGAGTAGTTGGGTATCCCAATGTTGGAAAGTCATCACTAATCAACCGACTACTTAAGCGAAGGATTTGTGAAGCAGCACCTAGACCAGGGGTCACTCGGGAATTGAAGAGCAACAGTGCTTAAAAATCGTTATAATGTGGATGCCGATGATGGCTGTGGAGAAGAATATGTGAAGGCTTTAGCGCAGCGCTTATTCAAGGGTGATGTGAATCAAGCTGCGTACCGTATATTGCATGACTTTCGTAAAGGGAGGT

Ace file of the UniGene biog2_v2.0_unigene12383

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5067	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	GTP-binding protein [Arabidopsis thaliana] gb\|AAN12960.1\| unknown protein [Arabidopsis thaliana] gb\|AEE82230.1\| GTP-binding protein [Arabidopsis thaliana]	-	-	65%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	70%
Blast2go	gtp-binding protein	-	-	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	GTP binding	GO:0005525	Molecular Function	0.0	80%
Blast2go	chloroplast	GO:0009507	Cellular Component	0.0	80%

Source	InterPros	Term	Type	Identity
Sma3		IPR002917	-	-
Sma3		IPR005289	-	-
Sma3	GTP binding domain	IPR006073	-	-
Sma3	GTPase, MTG1	IPR016478	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9H886

Fln msg: Overlapping hits, possible frame ERROR between 202 and 198, and possible frame ERROR between 320 and 322, Distance to subject end: 31 aas, your sequence is shorter than subject: 156 - 387

Fln protein: LNRVDMVSTADKNAWATYFS*QGLTVVLANGQLGMETMKLARVEKSLASNVNNKRRAKGLLPRAIxxxIRAGVVGYPNVGKSSLINRLLKRRICEAAPRPGVTRELxRATVLKNRYNVDADDGCGEEYVKALAQRLFKGDVNQAAYRILHDFRKGR

Protein Length: 157

Fln nts: CTTGAATAGAGTAGACATGGTCTCAACTGCAGACAAGAATGCATGGGCTACATATTTCTCATGACAGGGTTTAACAGTAGTCTTGGCCAATGGCCAGCTTGGAATGGAGACGATGAAGTTGGCAAGAGTGGAAAAATCATTAGCTAGTAATGTGAACAACAAGCGTAGGGCCAAAGGACTTCTTCCTCGTGCGATTxxxxxxxxxATCAGAGCAGGAGTAGTTGGGTATCCCAATGTTGGAAAGTCATCACTAATCAACCGACTACTTAAGCGAAGGATTTGTGAAGCAGCACCTAGACCAGGGGTCACTCGGGAATTGxxxAGAGCAACAGTGCTTAAAAATCGTTATAATGTGGATGCCGATGATGGCTGTGGAGAAGAATATGTGAAGGCTTTAGCGCAGCGCTTATTCAAGGGTGATGTGAATCAAGCTGCGTACCGTATATTGCATGACTTTCGTAAAGGGAGGT

Fln Alignment:

biogeco2_mira_c9142___LNRVDMVSTADKNAWATYFS*QGLTVVLANGQLGMETMKLARVEKSLASNVNNKRRAKGLLPxxxxxGVVGYPNVGKSSLINRLLKRRICEAAPRPGVTRELKxATVLKNRYNVDADDGCGEEYVKALAQRLFKGDVNQAAYRILHDFRKGR
B9H886__________________LNREDMISKADRNAWATYFARQGIKVVLSNGQLGMGTMKLSRFAKSLAASVNVKRREKGLLPxxxxxGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRELRxAKALNNRYKMDADDFCGKIFVQKLSVHLFNGDTHQAAFRILSDFRKGK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain