SustainPineDB

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Assembly info
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ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene12329

Length: 302 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene12329
TACCCTGAGGGAGATTTTGCAGACCTCCACTACACATAAGGATATCCTCCAAGCTCAAACAAAGATTGCCAAATCATTATTTCAGTTTCTCACAAATTTGTCGTCGGATTTTCCAATTCCAGAAGTTGAAATTGTTTTGGCAAAATGGCTGGACATGGTGACAAACATCGACAGAGCAAGAGACAAAAAGCTTCTAAAAAGGAGGAGCAACTTGCAGATGAAGACATAGACTATGTAGAGGAATATGAAGAAGATTACCAAGATGGTGAGGGTGATGGGCTACAAAAGAGAGATTTTTCGAA

Ace file of the UniGene biog2_v2.0_unigene12329 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene53	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	DNA repair and transcription factor XPB1 (ISS) [Ostreococcus tauri] emb\|CAL53063.1\| DNA repair and transcription factor XPB1 (ISS) [Ostreococcus tauri]	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	protein	-	-	95%

Source	GOs	Term	Type	Identity
Blast2go	response to toxin	GO:0009636	Biological Process	95%
Blast2go	nucleotide-excision repair	GO:0006289	Biological Process	95%
Blast2go	response to UV	GO:0009411	Biological Process	95%
Blast2go	DNA binding	GO:0003677	Molecular Function	95%
Blast2go	ATP-dependent DNA helicase activity	GO:0004003	Molecular Function	95%
Blast2go	ATP binding	GO:0005524	Molecular Function	95%
Blast2go	cytoplasm	GO:0005737	Cellular Component	95%
Blast2go	nucleus	GO:0005634	Cellular Component	95%

Source	InterPros	Term	Type	Identity
Sma3	Xeroderma pigmentosum group B protein (XP-B)	IPR001161	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Helicase/UvrB domain	IPR006935	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKF2

Fln msg: Distance to subject end: 719 aas, your sequence is shorter than subject: 52 - 772

Fln protein: MAGHGDKHRQSKRQKASKKEEQLADEDIDYVEEYEEDYQDGEGDGLQKRDFS

Protein Length: 53

Fln nts: TACCCTGAGGGAGATTTTGCAGACCTCCACTACACATAAGGATATCCTCCAAGCTCAAACAAAGATTGCCAAATCATTATTTCAGTTTCTCACAAATTTGTCGTCGGATTTTCCAATTCCAGAAGTTGAAATTGTTTTGGCAAA_-_ATGGCTGGACATGGTGACAAACATCGACAGAGCAAGAGACAAAAAGCTTCTAAAAAGGAGGAGCAACTTGCAGATGAAGACATAGACTATGTAGAGGAATATGAAGAAGATTACCAAGATGGTGAGGGTGATGGGCTACAAAAGAGAGATTTTTCGAA

Fln Alignment:

biogeco2_mira_c9077___MAGHGDKHRQSKRQKASKKEEQLAXXXXXXXXXXXXXXXXXXXXGLQKRDFS
B8LKF2__________________MAGHGDKHRQSKRQKTSKKEEQFADEDIDYVEEYEEDYQDGEGDGLQKRDFS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain