SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene12317

Length: 430 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene12317
GGAAGACAAAATGCAGCATTTTGTGACTTCCATTCCATGCGGTTCGTTTTGGGGTTACTTCTCAGTGCCCCATTTGGCAGCACTCTTCATGTCTTTGCAGAAGATGACTGTGAGTTTCCAGCAATATTCAACTTCGGGGATTCAAATTCGGACACTGGTGGGCTCTCTGCAGCTTTTGGCGCGGCCCCTCCTCCTAATGGAGAGTCTTTCTTTCACAAGCCTGCAGGCAGATACTGTGATGGCAGGCTGGTCATAGACTTCATCGCCGAGAGATTGGGTTTGCCATATTTGAGCCCCTATCTGCAGTCTGTGGGTTCAAACTTCAGCCATGGAGCGAACTTTGCAACTGCTGGATCAACCATTCGTCAACAGAACTCTTCATTGTTCCAGTCTGGTTTCAGCCCATTTTCCCTGGACGTGCAGTCATGGC

Ace file of the UniGene biog2_v2.0_unigene12317 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6092	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	alpha-L-fucosidase 3 [Arabidopsis thaliana] sp\|Q9FXE5.1\|FUCO3_ARATH RecName: Full=Alpha-L-fucosidase 3; AltName: Full=Alpha-1,2-fucosidase; Short=AtFXG1; AltName: Full=Alpha-L-fucoside fucohydrolase 3; Flags: Precursor gb\|AAG28886.1\|AC008113_2 F12A21.4 [A	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	49%
Blast2go	gdsl esterase lipase	-	-	76%

Source	GOs	Term	Type	Identity
Blast2go	lipid metabolic process	GO:0006629	Biological Process	76%
Blast2go	hydrolase activity, acting on ester bonds	GO:0016788	Molecular Function	76%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	76%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Lipase, GDSL	IPR001087	-	-
Sma3	Histone H2A	IPR002119	-	-
Sma3	Lipase, GDSL, active site	IPR008265	-	-
Sma3		IPR015706	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LMG5

Fln msg: Distance to subject end: 251 aas, your sequence is shorter than subject: 131 - 381

Fln protein: MRFVLGLLLSAPFGSTLHVFAEDDCEFPAIFNFGDSNSDTGGLSAAFGAAPPPNGESFFHKPAGRYCDGRLVIDFIAERLGLPYLSPYLQSVGSNFSHGANFATAGSTIRQQNSSLFQSGFSPFSLDVQSW

Protein Length: 132

Fln nts: GGAAGACAAAATGCAGCATTTTGTGACTTCCATTCC_-_ATGCGGTTCGTTTTGGGGTTACTTCTCAGTGCCCCATTTGGCAGCACTCTTCATGTCTTTGCAGAAGATGACTGTGAGTTTCCAGCAATATTCAACTTCGGGGATTCAAATTCGGACACTGGTGGGCTCTCTGCAGCTTTTGGCGCGGCCCCTCCTCCTAATGGAGAGTCTTTCTTTCACAAGCCTGCAGGCAGATACTGTGATGGCAGGCTGGTCATAGACTTCATCGCCGAGAGATTGGGTTTGCCATATTTGAGCCCCTATCTGCAGTCTGTGGGTTCAAACTTCAGCCATGGAGCGAACTTTGCAACTGCTGGATCAACCATTCGTCAACAGAACTCTTCATTGTTCCAGTCTGGTTTCAGCCCATTTTCCCTGGACGTGCAGTCATGGC

Fln Alignment:

biogeco2_mira_c9060___FVLGLLLSAPFGSTLHVFAEDDCEFPAIFNFGDSNSDTGGLSAAFGAAPPPN----GESFFHKPAGRYCDGRLVIDFIAERLGLPYLSPYLQSVGSNFSHGANFATAGSTIRQQNSSLFQSGFSPFSLDVQ
B8LMG5__________________FLQALVLTA----LLPVIAYGKCDFPAIFNFGDSNSDTGGWHFAFPYQMLPDNAPYGRTFFGQPSYRYSDGRLSVDFLAQALGLPFISPFLQSVGSRFEQGANFAASGASVRPTSTDF----NAPISLTVQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain