SustainPineDB

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Assembly info
Unigenes
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ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene12314

Length: 492 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene12314
AGCGAGCTACTGCTAATGGAGGCGCGAATGGCGGGGAAGGATGGCGGCGGGCGTGACGGTGCCCATGCGTATATCGACTCGCTCATGAAGTTAGAGCTGCCGGAAGGGCGCGGTAAGCCCAGTGACGAAGAGTTAGTGACCCTGTGTTCGGAGCTGCTGTCTGCCGGCACCGACACCACGTCTACTGCGCTGGAATGGGCAATGCTTCGCATGGTGCTGCACCCCGATATTCAGGAGACTCTGTACCGCGAGATCGTTGCCGTCGTGGGTGACAGGAAAGTTGAGGAAAGTGACATCGAGAAGTTGCCGTACCTCAACGCCGTGGTGAAAGAGACCCTGCGGCGACACCCGCCGGGTCACTTCGTGCTGTCTCATGCCGTTACACAGGACTGCAAGCTCAGGGGTTATGACATTCCGTACGGTGCTAACGTGGAGTTCTACACGGCGTGGATGTCATTCGATCCTCGCATTTGGCCGGACCCCATGACTTTC

Ace file of the UniGene biog2_v2.0_unigene12314 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene28266	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	RecName: Full=Cytochrome P450 77A1; AltName: Full=CYPLXXVIIA1; AltName: Full=Cytochrome P-450EG6 emb\|CAA50647.1\| P450 hydroxylase [Solanum melongena]	-	-	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	cytochrome p450	-	-	70%

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Inorganic pyrophosphatase	IPR008162	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLH0

Fln msg: Distance to subject end: 95 aas, your sequence is shorter than subject: 164 - 327

Fln protein: SELLLMEARMAGKDGGGRDGAHAYIDSLMKLELPEGRGKPSDEELVTLCSELLSAGTDTTSTALEWAMLRMVLHPDIQETLYREIVAVVGDRKVEESDIEKLPYLNAVVKETLRRHPPGHFVLSHAVTQDCKLRGYDIPYGANVEFYTAWMSFDPRIWPDPMTF

Protein Length: 165

Fln nts: AGCGAGCTACTGCTAATGGAGGCGCGAATGGCGGGGAAGGATGGCGGCGGGCGTGACGGTGCCCATGCGTATATCGACTCGCTCATGAAGTTAGAGCTGCCGGAAGGGCGCGGTAAGCCCAGTGACGAAGAGTTAGTGACCCTGTGTTCGGAGCTGCTGTCTGCCGGCACCGACACCACGTCTACTGCGCTGGAATGGGCAATGCTTCGCATGGTGCTGCACCCCGATATTCAGGAGACTCTGTACCGCGAGATCGTTGCCGTCGTGGGTGACAGGAAAGTTGAGGAAAGTGACATCGAGAAGTTGCCGTACCTCAACGCCGTGGTGAAAGAGACCCTGCGGCGACACCCGCCGGGTCACTTCGTGCTGTCTCATGCCGTTACACAGGACTGCAAGCTCAGGGGTTATGACATTCCGTACGGTGCTAACGTGGAGTTCTACACGGCGTGGATGTCATTCGATCCTCGCATTTGGCCGGACCCCATGACTTTC

Fln Alignment:

biogeco2_mira_c9057___AGKDGGGRDGAHAYIDSLMKLELPEGRGKPSDEELVTLCSELLSAGTDTTSTALEWAMLRMVLHPDIQETLYREIVAVVGDRKVEESDIEKLPYLNAVVKETLRRHPPGHFVLSHAVTQDCKLRGYDIPYGANVEFYTAWMSFDPRIWPDPMTF
B8LLH0__________________AHTQAGSPDGAHAYIDSLMNLELPEGRGKPTDEELVTLCSELLTAGTDTTSTALEWAMLRMVMHQDIQETLYQEICDVVGDRKVEGKDIENLPYLNAVVKETLRRHPPGHFVLSHAVTQDCQLRGYDIPYKANVEFYTAWMSFDPKIWPDPMTF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain