SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene12274

Length: 336 nt

UniGene Fasta

>biog2_v2.0_unigene12274
ATGGGGACTATGGAGAAATGGAATGTCAGTGTTGGATGATGAACTTAGGAATGTGGGAGCAAGGATTGTTTATAAAGCAGTGTTTCCACCTGGAGTCAGCAGAAGTGACATTGGCAGATGCTTGGTACAATTGGTTCAGATGGAGTCACGAGTTCTTGTTGTTCATATGGATCCGGATGCAGGTCTGAAACTTTTTGCTGAAGCAAGGTCCTTAAAATGTTGATCACTGGCTACGTATGGATAGCCACAGATTGGCTATCGTCTGCTATAGATTCTGACATACTTGATTCTGACACGATGAGTTCACTCCAAGGGATCATTAGCTTGCGTCGATAT

Ace file of the UniGene biog2_v2.0_unigene12274

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene13976	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Glutamate receptor n=1 Tax=Populus trichocarpa RepID=B9IAE8_POPTR	-	-	56%
FL-Next	sp=Glutamate receptor 3.4; Arabidopsis thaliana (Mouse-ear cress).	-	-	52%
Blast2go	glutamate-gated kainate-type ion channel receptor subunit 5	-	-	70%

Source	GOs	Term	Type	Identity
Blast2go	transport	GO:0006810	Biological Process	70%
Blast2go	response to light stimulus	GO:0009416	Biological Process	70%
Blast2go	cellular calcium ion homeostasis	GO:0006874	Biological Process	70%
Blast2go	signal transduction	GO:0007165	Biological Process	70%
Blast2go	glutamate receptor activity	GO:0008066	Molecular Function	70%
Blast2go	intracellular ligand-gated ion channel activity	GO:0005217	Molecular Function	70%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	70%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	70%
Blast2go	membrane	GO:0016020	Cellular Component	70%

Source	InterPros	Term	Type	Identity
Sma3	GPCR, family 3	IPR000337	-	-
Sma3	Ionotropic glutamate receptor	IPR001320	-	-
Sma3	Extracellular solute-binding protein, family 3	IPR001638	-	-
Sma3	Extracellular ligand-binding receptor	IPR001828	-	-
Sma3	GPCR, family 3, gamma-aminobutyric acid receptor, type B	IPR002455	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3		IPR015683	-	-
Sma3	Ionotropic glutamate receptor, plant	IPR017103	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8GXJ4

Fln msg: Overlapping hits, possible frame ERROR between 214 and 193, Distance to subject end: 644 aas, your sequence is shorter than subject: 112 - 959

Fln protein: WGLWRNGMSVLDDELRNVGARIVYKAVFPPGVSRSDIGRCLVQLVQMESRVLVVHMDPDAGLKxxxxxxxxxMLITGYVWIATDWLSSAIDSDILDSDTMSSLQGIISLRRY

Protein Length: 113

Fln nts: ATGGGGACTATGGAGAAATGGAATGTCAGTGTTGGATGATGAACTTAGGAATGTGGGAGCAAGGATTGTTTATAAAGCAGTGTTTCCACCTGGAGTCAGCAGAAGTGACATTGGCAGATGCTTGGTACAATTGGTTCAGATGGAGTCACGAGTTCTTGTTGTTCATATGGATCCGGATGCAGGTCTGAAAxxxxxxxxxxxxxxxxxxxxxxxxxxxATGTTGATCACTGGCTACGTATGGATAGCCACAGATTGGCTATCGTCTGCTATAGATTCTGACATACTTGATTCTGACACGATGAGTTCACTCCAAGGGATCATTAGCTTGCGTCGATAT

Fln Alignment:

biogeco2_mira_c9005___RNGMSVLDDELRNVGARIVYKAVFPPGVSRSDIGRCLVQLVQMESRVLVVHMDPDAGLKLxxxxxxxKMLITGYVWIATDW-XXXXXXXXXXXXXTMSSLQGIISLRRY
Q8GXJ4__________________RNGISVLGDVLAKKRSRISYKAAITPGADSSSIRDLLVSVNLMESRVFVVHVNPDSGLNVxxxxxxxGMMASGYVWIATDWLPTAMDSMEHVDSDTMDLLQGVVAFRHY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain