SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene12233

Length: 738 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene12233

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene36686	2/3
SustainPine v2.0	sp_v2.0_unigene54282	1/3

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	74%
Blast2go	vacuolar protein sorting-associated protein 11 homolog	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	binding	GO:0005488	Molecular Function	78%
Blast2go	endosome	GO:0005768	Cellular Component	78%
Blast2go	protein complex	GO:0043234	Cellular Component	78%
Blast2go	plant-type vacuole membrane	GO:0009705	Cellular Component	78%

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	0.0	-
Sma3	Vacuolar protein sorting-associated protein 11	IPR016528	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: tr_plants

Fln subject: F6HHM1

Fln msg: Overlapping hits, possible frame ERROR between 447 and 444, Distance to subject end: 703 aas, atg_distance in limit (1-15): atg_distance = 12, W2: There is no M at the beginning, your sequence is shorter than subject: 246 - 961

Fln protein: EKVPGTSVAEELKEKVVCCSSGRGRMVVGSEDGMVHVLDRGLKLNYSFQAHSGSVQFIQQLKQRNILVTIGEDETASPQLSAMCLKVFDLDKMQSEGSSTTGPTCIQILRIFTNQFPEAKITSFLVFEEAPPILMISIGLETGYIYCxxxDVARERIVRTKLEVEESSNGSRSPVTGLGFRVEGPALQLFVVTTTSVSLFDMHHQPPRRHVLDQIGCGSNSVSMSDNQELVIGRTEAVYFMKLMGE

Protein Length: 247

Fln nts: GAGAAGGTCCCTGGGACTTCTGTTGCAGAGGAGCTGAAAGAGAAGGTGGTGTGCTGCTCGAGTGGGCGAGGCCGCATGGTGGTCGGATCAGAAGATGGGATGGTGCACGTGCTGGATCGGGGTTTAAAGCTCAATTACAGCTTCCAGGCTCATAGCGGCAGCGTCCAGTTCATTCAACAGCTGAAGCAACGGAATATACTGGTAACTATAGGAGAAGATGAAACAGCATCACCTCAGCTTTCAGCAATGTGTCTCAAGGTCTTTGACCTGGATAAAATGCAGTCAGAGGGATCAAGTACCACAGGCCCTACTTGCATCCAAATTCTGCGAATTTTTACCAACCAATTTCCTGAAGCAAAGATTACATCATTTCTAGTATTTGAAGAGGCACCTCCAATATTAATGATCTCAATAGGACTAGAGACCGGTTATATTTATTGTxxxxxxxxxGATGTTGCTCGTGAACGTATTGTACGAACAAAGCTAGAAGTTGAAGAATCTTCAAATGGCAGTCGATCTCCTGTGACAGGACTAGGATTCCGAGTTGAAGGCCCAGCTCTTCAGCTTTTTGTTGTAACAACAACTTCAGTGAGCCTTTTTGATATGCATCACCAGCCACCCAGGAGGCACGTCTTAGATCAGATTGGATGTGGAAGTAATAGTGTTAGCATGAGTGATAACCAGGAACTGGTTATTGGGCGGACTGAGGCTGTATATTTTATGAAGTTGATGGGTGAGG

Fln Alignment:

biogeco2_mira_c8956___EKVPGT-SVAEELKEKVVCCSSGRGRMVVGSEDGMVHVLDRGLKLNYSFQAHSGSVQFIQQLKQRNILVTIGEDETASPQLSAMCLKVFDLDKMQSEGSSTTGPTCIQILRIFTNQFPEAKITSFLVFEEAPPILMISIGLETGYIYCIxGDVARERIVRTKLEVEESSNGSRSPVTGLGFRVEGPALQLFVVTTTSVSLFDMHHQPPRRHVLDQIGCGSNSVSMSDNQELVIGRTEAVYFMKLMG
F6HHM1__________________EKLAGKCSIPEEVAGKIECCSSGRGKIVLGCDDGTVSFLDRGLKFNYGFQAHSSSVLFVQQLKQRNYLVTVGEDEQVSPQLSAMCLKVFDLDKMQPEGSSTMSPDCIQILRIFTNQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIxGDIARERITRFKLQVDNVSDKSNSSITGLGFRMDGQALQLFAVTPTSVSLFSLQSQPPRRQTLDQIGCNVNSVTMSDRLELIIGRPEAVYFYEVDG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain