SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene12231

Length: 566 nt

UniGene Fasta

>biog2_v2.0_unigene12231
CTATTGCAGATGGTCGTAATGCAGATAATTTGATTGCAGGGCTGAGACAAGTTGTAGATATATTTGGGGATCCATTGCATAGGTTAGCTGCATATATGGTAGAAGGTCTTGTAGCAAGGTTGCATTTCTCAGGAGGACATATTTACAAAACCCTAAAATGCAAGGAGCCTACCAGTTCCGAACTCCTTTCTTACATGCATATTCTATATGAAGTTTGTCCTTATTTCAATTGGGTATGTAGCTGCAAATGGTGCCATCGCGGAAGCATTTAAAGACAAAGACAGGGTGCACATTATTGATTTTCAGATCGCTCAAGGTAGCCAGTGGGTAACATTAATTCAAGCATTTGCAGCAAGACAAGGTGGTTCGCCTCATGTCCGCATCACAGGTGTGGATGATCCTCAATCAGAGTATGCTCGAGGTCAAGGATTAAATTTAGTTGGCGAAAGATTATCAAAGCTTGCAGAAAGCTACCAAGTTCCTTTCGAATTTCATGGTTTGTCTGTTTTTGGGTCTGACGTTCATGCTGAGATGCTTGAGATTCGGCCCGGGGAAGCTTTGGCTGT

Ace file of the UniGene biog2_v2.0_unigene12231

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene206	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	Scarecrow-like 1 transcription factor (Fragment) n=1 Tax=Pinus pinaster RepID=B1PPU0_PINPS	-	-	94%
FL-Next	tr=SCARECROW-like protein 1; Pinus radiata (Monterey pine) (Pinus insignis).	-	-	31%
Blast2go	gras family transcription factor	-	-	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	Anthranilate phosphoribosyltransferase.	EC:2.4.2.18	-	0.0	81%

Source	KEGGs	Term	Identity
Blast2go	Phenylalanine, tyrosine and tryptophan biosynthesis	00400	81%
Blast2go	Biosynthesis of phenylpropanoids	01061	81%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	81%
Blast2go	Biosynthesis of plant hormones	01070	81%
Blast2go	Metabolic pathways	01100	81%
Blast2go	Biosynthesis of secondary metabolites	01110	81%

Source	GOs	Term	Type	Identity
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	81%
Blast2go	photomorphogenesis	GO:0009640	Biological Process	81%
Blast2go	signal transduction	GO:0007165	Biological Process	81%
Blast2go	tryptophan biosynthetic process	GO:0000162	Biological Process	81%
Blast2go	signal transducer activity	GO:0004871	Molecular Function	81%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	81%
Blast2go	anthranilate phosphoribosyltransferase activity	GO:0004048	Molecular Function	81%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	81%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	81%

Source	InterPros	Term	Type	e value	Identity
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	0.0	-
Sma3	Transcription factor GRAS	IPR005202	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A3E2G2

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 174 aas, your sequence is shorter than subject: 90 - 810

Fln protein: IADGRNADNLIAGLRQVVDIFGDPLHRLAAYMVEGLVARLHFSGGHIYKTLKCKEPTSSELLSYMHILYEVCPYFNWVCSCKWCHRGSI*

Protein Length: 91

Fln nts: CTATTGCAGATGGTCGTAATGCAGATAATTTGATTGCAGGGCTGAGACAAGTTGTAGATATATTTGGGGATCCATTGCATAGGTTAGCTGCATATATGGTAGAAGGTCTTGTAGCAAGGTTGCATTTCTCAGGAGGACATATTTACAAAACCCTAAAATGCAAGGAGCCTACCAGTTCCGAACTCCTTTCTTACATGCATATTCTATATGAAGTTTGTCCTTATTTCAATTGGGTATGTAGCTGCAAATGGTGCCATCGCGGAAGCATTTAAAGACAAAGACAGGGTGCACATTATTGATTTTCAGATCGCTCAAGGTAGCCAGTGGGTAACATTAATTCAAGCATTTGCAGCAAGACAAGGTGGTTCGCCTCATGTCCGCATCACAGGTGTGGATGATCCTCAATCAGAGTATGCTCGAGGTCAAGGATTAAATTTAGTTGGCGAAAGATTATCAAAGCTTGCAGAAAGCTACCAAGTTCCTTTCGAATTTCATGGTTTGTCTGTTTTTGGGTCTGACGTTCATGCTGAGATGCTTGAGATTCGGCCCGGGGAAGCTTTGGCTGT

Fln Alignment:

biogeco2_mira_c8953___DGRNADNLIAGLRQVVDIFGDPLHRLAAYMVEGLVARLHFSGGHIYKTLKCKEPTS-SELLSYMHILYEVCPY
A3E2G2__________________DTRGANETLKQIRQHASAYGDGSQRLANYFADGIAARLSGSGGRLFTMISSGALSSAAEILKAYQLLLVATPF

SNPs (tot: 3)

Position	A %	G %	T %	Probability
412		66	33	0.997476
413	66	33		0.997471
415		33	66	0.997471

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain