SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene12227

Length: 276 nt

UniGene Fasta

>biog2_v2.0_unigene12227
CTGGTCTCCTTGCTGGATACATATACGATAAAGAAGCTCAAAGGCAGGGTGGCCATTCTTATCGAACGATCATGGGTGACACCAATGTTGACTGTTTAGGACCTAACTGCTTCAGGCTTACCTTCTTATCATGGCAGGGGTGTGTGCTTTTGGGGTTCTAATGAGCATTATTCTTACAATCCGGATAAGGCCAGTTTATGAGACACTTTATGGCAGGAGTTCCTTCTGCATTCAGAAAACCATGGATACAGAAGAATTAACCTTGGAGAAGGGATC

Ace file of the UniGene biog2_v2.0_unigene12227

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7486	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	nodulin family protein [Arabidopsis thaliana] gb\|AAF27120.1\|AC018849_8 nodulin-like protein; 38383-40406 [Arabidopsis thaliana] gb\|AAK59618.1\| putative nodulin protein [Arabidopsis thaliana] gb\|AAL07191.1\| putative nodulin protein [Arabidopsis thaliana] g	-	-	40%
FL-Next	tr=Nodulin-like protein; Oryza sativa subsp. japonica (Rice).	-	-	53%
Blast2go	uncharacterized membrane protein ymr155w-like	-	-	67%

Source	GOs	Term	Type	Identity
Blast2go	membrane	GO:0016020	Cellular Component	67%
Blast2go	mitochondrion	GO:0005739	Cellular Component	67%
Blast2go	nucleus	GO:0005634	Cellular Component	67%
Blast2go	response to karrikin	GO:0080167	Biological Process	67%

Source	InterPros	Term	Type	Identity
Sma3	Hydroxymethylglutaryl-CoA reductase, class I/II	IPR002202	-	-
Sma3	SecY protein	IPR002208	-	-
Sma3	Glycoside hydrolase, family 79	IPR005199	-	-
Sma3	Nodulin-like	IPR010658	-	-
Sma3	Major facilitator superfamily	IPR011701	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: tr_plants

Fln subject: Q8H613

Fln msg: Overlapping hits, possible frame ERROR between 155 and 128, STOP codon was not found. Distance to subject end: 9 aas, your sequence is shorter than subject: 91 - 567

Fln protein: GLLAGYIYDKEAQRQGGHSYRTIMGDTNVDCLGPNCFRLTFxxxxxxxxxxxLMSIILTIRIRPVYETLYGRSSFCIQKTMDTEELTLEKG

Protein Length: 92

Fln nts: CTGGTCTCCTTGCTGGATACATATACGATAAAGAAGCTCAAAGGCAGGGTGGCCATTCTTATCGAACGATCATGGGTGACACCAATGTTGACTGTTTAGGACCTAACTGCTTCAGGCTTACCTTCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCTAATGAGCATTATTCTTACAATCCGGATAAGGCCAGTTTATGAGACACTTTATGGCAGGAGTTCCTTCTGCATTCAGAAAACCATGGATACAGAAGAATTAACCTTGGAGAAGGGATC

Fln Alignment:

biogeco2_mira_c8947___LAGYIYDKEAQRQGGHSYRTIMGDTNVDCLGPNCFRLTFLxxxxxxxxxVLMSIILTIRIRPVYETLYGRSSF
Q8H613__________________LAGYVYDQEVERQ----HATTM-DTDIACHGPNCFRLTFCxxxxxxxxxTLLSIVLTVRIRPVYQMLYAGGSF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain