SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene12221

Length: 348 nt

UniGene Fasta

>biog2_v2.0_unigene12221
CACCTGTCTGGAACGATGTACTTAAACGCCATACAGGCTACTCTGAAACAGACCTCAAGGAGTGTACAAGACTGATGGTGGCATTCCATCAGAGTTCAGATGGGGGCAGATTGAATGTAGTTTTTAAAAAGTACTCAATGCCAGAGTATGACTCTGTGGCACTTATCAAACCTGCCAAGCTCCCTGCATAGGCTTTCGATTGGAGTTGCAGTTGCAGAGTGTGTAGCAACTGATGAGCATAGTTGTTATGTTTCTCAACTCAGTTGCACATCCAGCAACTGAGATTGATATGTCGATCAAAATATTTAGCATAGAAGATCATTCATTTTCTTGATATTCCCCTTTGGG

Ace file of the UniGene biog2_v2.0_unigene12221

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6837	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	cyclin B1 [Allium cepa]	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	73%
Blast2go	cyclin b1	-	-	76%

Source	GOs	Term	Type	Identity
Blast2go	cell cycle	GO:0007049	Biological Process	76%
Blast2go	cell division	GO:0051301	Biological Process	76%
Blast2go	nucleus	GO:0005634	Cellular Component	76%

Source	InterPros	Term	Type	Identity
Sma3	Armadillo	IPR000225	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Chaperonin TCP-1, conserved site	IPR002194	-	-
Sma3	U box domain	IPR003613	-	-
Sma3	Cyclin, C-terminal	IPR004367	-	-
Sma3	Basic-leucine zipper domain	IPR004827	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3		IPR006670	-	-
Sma3	Cyclin, N-terminal	IPR006671	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Cyclin-like	IPR013763	-	-
Sma3	Cyclin A/B/D/E	IPR014400	-	-
Sma3	Cyclin A, G2/mitotic-specific	IPR015453	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AC16

Fln msg: your sequence is shorter than subject: 63 - 465

Fln protein: PVWNDVLKRHTGYSETDLKECTRLMVAFHQSSDGGRLNVVFKKYSMPEYDSVALIKPAKLPA*

Protein Length: 64

Fln nts: CACCTGTCTGGAACGATGTACTTAAACGCCATACAGGCTACTCTGAAACAGACCTCAAGGAGTGTACAAGACTGATGGTGGCATTCCATCAGAGTTCAGATGGGGGCAGATTGAATGTAGTTTTTAAAAAGTACTCAATGCCAGAGTATGACTCTGTGGCACTTATCAAACCTGCCAAGCTCCCTGCATAG___GCTTTCGATTGGAGTTGCAGTTGCAGAGTGTGTAGCAACTGATGAGCATAGTTGTTATGTTTCTCAACTCAGTTGCACATCCAGCAACTGAGATTGATATGTCGATCAAAATATTTAGCATAGAAGATCATTCATTTTCTTGATATTCCCCTTTGGG

Fln Alignment:

biogeco2_mira_c8938___PVWNDVLKRHTGYSETDLKECTRLMVAFHQSSDGGRLNVVFKKYSMPEYDSV
D5AC16__________________PVWSHVLKAHSGYSETDLKECVKLMVAFHQSSEESKLNTVIKKYSTPEYNSV

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain