SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene12215

Length: 527 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene12215
GGGGTGTTCCGACTTTCCACTTCAAGACTGCAGCAGTGATGATAGTGGCATCTATCATTGCAACTGTTGATTCGGTTGGGACATATCATGGAATATCCCTTCTGGTGGCATCGAAGGCACCGACACGAAATGTTGTAAGTAGAGGAATTGGTCTGGAAGGCTTGACTAGCTTGTTGGCTGGTCTTTGGGGCACGGGCACAGGAATGACAACTCTCACGGAGAATGTGCATACAGTTGCTGTAACAAAGGTTGGGAGCCGTCGTGCTGTGGAGTTTGGGGCATACATTTTGATTGTTCTGTCATTCATTGGTAAGGTGGGAGGATTTGTTGCATCCATTCCACAAGTTATTGTTGCTGGGCTTTTATGTTTCATATGGACAATGCTTGTTGCTTTGGGTCTTTCAAACCTGAGATATAGTGAAACTGGAAGCTCGCGGAATATGATAATAGTGGGACTATCTTTATTCCTTTCTCTATCAATTCCTTCTTATTTCAACAACATGTTAAAGGACATAACACCCAGTTAC

Ace file of the UniGene biog2_v2.0_unigene12215 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16795	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	nucleobase-ascorbate transporter 12 [Arabidopsis thaliana] sp\|Q3E7D0.3\|NAT12_ARATH RecName: Full=Nucleobase-ascorbate transporter 12; Short=AtNAT12 gb\|AAM20397.1\| putative membrane transporter [Arabidopsis thaliana] gb\|AAN72132.1\| putative membrane transp	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	43%
Blast2go	nucleobase ascorbate transporter	-	-	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	79%

Source	InterPros	Term	Type	Identity
Sma3	Xanthine/uracil permease	IPR006042	-	-
Sma3	Xanthine/uracil/vitamin C permease	IPR006043	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQ21

Fln msg: Distance to subject end: 77 aas, your sequence is shorter than subject: 175 - 524

Fln protein: GVPTFHFKTAAVMIVASIIATVDSVGTYHGISLLVASKAPTRNVVSRGIGLEGLTSLLAGLWGTGTGMTTLTENVHTVAVTKVGSRRAVEFGAYILIVLSFIGKVGGFVASIPQVIVAGLLCFIWTMLVALGLSNLRYSETGSSRNMIIVGLSLFLSLSIPSYFNNMLKDITPSY

Protein Length: 176

Fln nts: GGGGTGTTCCGACTTTCCACTTCAAGACTGCAGCAGTGATGATAGTGGCATCTATCATTGCAACTGTTGATTCGGTTGGGACATATCATGGAATATCCCTTCTGGTGGCATCGAAGGCACCGACACGAAATGTTGTAAGTAGAGGAATTGGTCTGGAAGGCTTGACTAGCTTGTTGGCTGGTCTTTGGGGCACGGGCACAGGAATGACAACTCTCACGGAGAATGTGCATACAGTTGCTGTAACAAAGGTTGGGAGCCGTCGTGCTGTGGAGTTTGGGGCATACATTTTGATTGTTCTGTCATTCATTGGTAAGGTGGGAGGATTTGTTGCATCCATTCCACAAGTTATTGTTGCTGGGCTTTTATGTTTCATATGGACAATGCTTGTTGCTTTGGGTCTTTCAAACCTGAGATATAGTGAAACTGGAAGCTCGCGGAATATGATAATAGTGGGACTATCTTTATTCCTTTCTCTATCAATTCCTTCTTATTTCAACAACATGTTAAAGGACATAACACCCAGTTAC

Fln Alignment:

biogeco2_mira_c8931___GVPTFHFKTAAVMIVASIIATVDSVGTYHGISLLVASKAPTRNVVSRGIGLEXXXXXXXXXXXXXXXXXXXTENVHTVAVTKVGSRRAVEFGAYILIVLSFIGKVGGFVASIPQVIVAGLLCFIWTMLVALGLSNLRYSETGSSRNMIIVGLSLFLSLSIPSYFN
B8LQ21__________________GAPTFDAGHTFGMMSAVLVSLIESTGAYKAASRLASATPPPAYVLSRGIGWQGIGILLDGLFGTGTGSTVSVENVGLLGITRVGSRRVVQISACFMIFFSILGKFGALFASIPFPIFAALYCVLFGLVAAVGISFIQFTNMNSMRNLFILGVSLFLGLSIPQYFN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain