SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene12208

Length: 260 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene12208
GGCATTTCCTTTCATTGTCACACAGCAATGTCCTGGTTTACCCTCAACATCTGCATCCATTAGTAGTGGTCTTCTTCTCAACTCCAACTCTCCAGGTGGAAGAGTGGGTACTGAAAATTCATATATTGCAAAAGCAGTTGCTGAGAATATGCCCCATTATTTACAAATGCTTCATGAGGTTCATATTTCTGTTACTATTTTGAAGTGCTTGGAGCATTTGGATGCGAAAGACATTGGAAGACCTGTTGCTTTTATTGCCA

Ace file of the UniGene biog2_v2.0_unigene12208 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10915	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Protein kinase family protein with ARM repeat domain [Arabidopsis thaliana] gb\|AAZ66048.1\| fused [Arabidopsis thaliana] gb\|AEE32527.1\| Protein kinase family protein with ARM repeat domain [Arabidopsis thaliana]	-	-	49%
FL-Next	tr=Putative uncharacterized protein Sb03g045640; Sorghum bicolor (Sorghum) (Sorghum vulgare).	-	-	53%
Blast2go	protein kinase family protein with arm repeat domain	-	-	69%

Source	ECs	Term	Type	e value	Identity
Blast2go	Calcium/calmodulin-dependent protein kinase.	EC:2.7.11.17	-	0.0	69%

Source	GOs	Term	Type	Identity
Blast2go	cytokinesis by cell plate formation	GO:0000911	Biological Process	69%
Blast2go	embryo sac cellularization	GO:0009558	Biological Process	69%
Blast2go	protein phosphorylation	GO:0006468	Biological Process	69%
Blast2go	calmodulin-dependent protein kinase activity	GO:0004683	Molecular Function	69%
Blast2go	ATP binding	GO:0005524	Molecular Function	69%
Blast2go	phragmoplast	GO:0009524	Cellular Component	69%

Source	InterPros	Term	Type	Identity
Sma3	Armadillo	IPR000225	-	-
Sma3	HEAT	IPR000357	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Carbohydrate kinase, FGGY, conserved site	IPR018483	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: C5XHT6

Fln msg: Distance to subject end: 270 aas, your sequence is shorter than subject: 86 - 1331

Fln protein: AFPFIVTQQCPGLPSTSASISSGLLLNSNSPGGRVGTENSYIAKAVAENMPHYLQMLHEVHISVTILKCLEHLDAKDIGRPVAFIA

Protein Length: 87

Fln nts: GGCATTTCCTTTCATTGTCACACAGCAATGTCCTGGTTTACCCTCAACATCTGCATCCATTAGTAGTGGTCTTCTTCTCAACTCCAACTCTCCAGGTGGAAGAGTGGGTACTGAAAATTCATATATTGCAAAAGCAGTTGCTGAGAATATGCCCCATTATTTACAAATGCTTCATGAGGTTCATATTTCTGTTACTATTTTGAAGTGCTTGGAGCATTTGGATGCGAAAGACATTGGAAGACCTGTTGCTTTTATTGCCA

Fln Alignment:

biogeco2_mira_c8923___AFPFIVTQQCPGLPSTXXXXXXXXXXXXXXXXGRVGTENSYIAKAVAENMPHYLQMLHEVHISVTILKCLEHLDAKDIGRPVAFIA
C5XHT6__________________AFPFVAVQSSPNMPSASASINSGFLLNVASPGGRIGTENKEMLKTIEQNMPQYIQVLLEVGIPGCMLRCLDYVDMEDLGRPLAIVA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain