SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene12105

Length: 209 nt

UniGene Fasta

>biog2_v2.0_unigene12105
GGGTAATGATGTTGCCGGAGGAGAGCTGAAAGCTGAGGATCCCGTAAGCAGCGATGCATTGGAGAATTCTCGAAGAAAAGACGATGGCGTGGCGGAGAAGTCAGATTATTCTTTAAACCAGGTATCTGAGAAGGTCAACCCTGTTGTAGGGTTTCAACTAACGTGTGAGTCTGTTTCTACTGATTCTGTGTCAATTATTGAAGAGAATG

Ace file of the UniGene biog2_v2.0_unigene12105

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10570	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	SAP domain-containing protein [Arabidopsis thaliana] ref\|NP_001078515.1\| SAP domain-containing protein [Arabidopsis thaliana] emb\|CAA18754.1\| putative protein [Arabidopsis thaliana] emb\|CAB80631.1\| putative protein [Arabidopsis thaliana] gb\|AEE87103.1\| SA	-	-	34%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	sap domain-containing protein	-	-	54%

Source	GOs	Term	Type	Identity
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	54%
Blast2go	cytoplasmic part	GO:0044444	Cellular Component	54%
Blast2go	intracellular membrane-bounded organelle	GO:0043231	Cellular Component	54%

Source	InterPros	Term	Type	e value	Identity
Sma3	DNA-binding SAP	IPR003034	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLW2

Fln msg: Distance to subject end: 460 aas, your sequence is shorter than subject: 69 - 669

Fln protein: GNDVAGGELKAEDPVSSDALENSRRKDDGVAEKSDYSLNQVSEKVNPVVGFQLTCESVSTDSVSIIEEN

Protein Length: 70

Fln nts: GGGTAATGATGTTGCCGGAGGAGAGCTGAAAGCTGAGGATCCCGTAAGCAGCGATGCATTGGAGAATTCTCGAAGAAAAGACGATGGCGTGGCGGAGAAGTCAGATTATTCTTTAAACCAGGTATCTGAGAAGGTCAACCCTGTTGTAGGGTTTCAACTAACGTGTGAGTCTGTTTCTACTGATTCTGTGTCAATTATTGAAGAGAATG

Fln Alignment:

biogeco2_mira_c8799___GNDVAGGELKAEDPVSSDALENSRRKDDGVAEKSDYSLNQVSEKVNPVVGFQLTCESVSTDSVSIIEEN
B8LLW2__________________GNDVVGEELKAEDPANSDALEDSRRKDDGVAEKSDYSLNQVSEKVSPVVGFQLTCESVSTDSVSIIEEN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain