SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene12061

Length: 410 nt

UniGene Fasta

>biog2_v2.0_unigene12061
ATGGGCCTTTTGGCCGCTTTTGACAGCAGGTTGGAAGTTGTGGCCTTTTTGCACACTTAATAACGTATGGTGTTGTACCTGTGGAACAAAGGTTACTGTGGGTGGATTGTGTTGAACTTATCTGGGTTACCATCCTTTCAACTTATTCTAATGAGAAATCAGAAGCCAGAAGTCTAGAAGCCTCGTCTGAAGGGAAACCTGACTCTGTTTTGAAATCTTCATCAGATGTCTCTCAGGGACAGAGATAATGATGCCATTGTCGGAGACAGCAGTCGATGTAAATTATGCAGATCTTAGGAGGAGAGTTCCATGTGGAATGTGTGCAATTCAGACGCCTTCTAAATGAACGGCATAAATGTGGATGGTATTGCATATATTGTGCTGGAAAGGGTATCAGTCCTGTCACAGTA

Ace file of the UniGene biog2_v2.0_unigene12061

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9583	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein [Arabidopsis thaliana] gb\|AAG52277.1\|AC019018_14 unknown protein; 54928-56750 [Arabidopsis thaliana] gb\|AAK60317.1\|AF385726_1 At1g52870/F14G24_14 [Arabidopsis thaliana] gb\|AAN72239.1\| At1g52870/F14G	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	peroxisomal membrane 22 kda (mpv17 pmp22) family protein	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	78%
Blast2go	integral to membrane	GO:0016021	Cellular Component	78%
Blast2go	plastid	GO:0009536	Cellular Component	78%

Source	InterPros	Term	Type	e value	Identity
Sma3	Mpv17/PMP22	IPR007248	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LNA6

Fln msg: Overlapping hits, possible frame ERROR between 58 and 48, your sequence is shorter than subject: 83 - 294

Fln protein: WAFWPLLTAGWKLWPxxxxxITYGVVPVEQRLLWVDCVELIWVTILSTYSNEKSEARSLEASSEGKPDSVLKSSSDVSQGQR*

Protein Length: 84

Fln nts: ATGGGCCTTTTGGCCGCTTTTGACAGCAGGTTGGAAGTTGTGGCCTxxxxxxxxxxxxxxxATAACGTATGGTGTTGTACCTGTGGAACAAAGGTTACTGTGGGTGGATTGTGTTGAACTTATCTGGGTTACCATCCTTTCAACTTATTCTAATGAGAAATCAGAAGCCAGAAGTCTAGAAGCCTCGTCTGAAGGGAAACCTGACTCTGTTTTGAAATCTTCATCAGATGTCTCTCAGGGACAGAGATAATGATGCCATTGTCGGAGACAGCAGTCGATGTAAATTATGCAGATCTTAGGAGGAGAGTTCCATGTGGAATGTGTGCAATTCAGACGCCTTCTAAATGAACGGCATAAATGTGGATGGTATTGCATATATTGTGCTGGAAAGGGTATCAGTCCTGTCACAGTA

Fln Alignment:

biogeco2_mira_c8747___FWPLLTAGWKLWPxxxxITYGVVPVEQRLLWVDCVELIWVTILSTYSNEKSEARSLEASSEGKPDSVLKSSSDVSQ
B8LNA6__________________FWPLLTAGWKLWPxxxxITYGVVPVEQRLLWVDCVELIWVTILSTYSNEKSEARSLEALPEGKSDSVSKSSSDVSK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain