SustainPineDB

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Assembly info
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene12048

Length: 263 nt

UniGene Fasta

>biog2_v2.0_unigene12048
ATATTGAGAGGCCCCTGGCATCTGCTGTGGAAGTCTAAACGGCTGATGAACATTGTCTCAGCAATCAGTGGAAGCCTTGACTGGGATTATGATGCAGTCCACGTTGTTAGAGGTGAAAAGTTGAGAACAAGGAACTTTGGCCCAATCTAGACAGAGATACATCACCTGATGCAATTTTGAGCAAGCTCACCAATTTAATTCAATATCAGAGGAAATTGTATATTGCTACCAACGAGCCAGATTACAACTATTTTGACAAATTG

Ace file of the UniGene biog2_v2.0_unigene12048

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene27648	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	calcium ion binding protein [Arabidopsis thaliana] emb\|CAB78006.1\| putative protein [Arabidopsis thaliana] emb\|CAB82117.1\| putative protein [Arabidopsis thaliana] gb\|AAL08248.1\| AT4g08810/T32A17_120 [Arabidopsis thaliana] gb\|AAO11571.1\| At4g08810/T32A17_1	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	58%
Blast2go	calcium ion binding protein	-	-	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	calcium ion binding	GO:0005509	Molecular Function	0.0	73%
Blast2go	nuclear outer membrane-endoplasmic reticulum membrane network	GO:0042175	Cellular Component	0.0	73%

Source	InterPros	Term	Type	e value	Identity
Sma3	Protease inhibitor I4, serpin	IPR000215	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRD6

Fln msg: Overlapping hits, possible frame ERROR between 144 and 117, Distance to subject end: 76 aas, your sequence is shorter than subject: 88 - 568

Fln protein: ILRGPWHLLWKSKRLMNIVSAISGSLDWDYDAVHVVRGxxxxxxxxxxxLDRDTSPDAILSKLTNLIQYQRKLYIATNEPDYNYFDKL

Protein Length: 89

Fln nts: ATATTGAGAGGCCCCTGGCATCTGCTGTGGAAGTCTAAACGGCTGATGAACATTGTCTCAGCAATCAGTGGAAGCCTTGACTGGGATTATGATGCAGTCCACGTTGTTAGAGGTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCTAGACAGAGATACATCACCTGATGCAATTTTGAGCAAGCTCACCAATTTAATTCAATATCAGAGGAAATTGTATATTGCTACCAACGAGCCAGATTACAACTATTTTGACAAATTG

Fln Alignment:

biogeco2_mira_c8732___ILRGPWHLLWKSKRLMNIVSAISGSLDWDYDAVHVVRGExxxxxxxxxNLDRDTSPDAILSKLTNLIQYQRKLYIATNEPDYNYFDKL
B8LRD6__________________VIQRPWDLIWKSRRLMEIVSAISTRMNWDFDSVHVVRGExxxxxxxxxNLDQDTSPDALREKLRYRIDENRDVYIATNEMDTGFFEPL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain