SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene12036

Length: 336 nt

UniGene Fasta

>biog2_v2.0_unigene12036
AACTCTTACAAGAGCACAGAAACATTGGGATATCTTAATTCCCAGCAGGCCTTGGCAGATTATGCCACTCTCATATTAGATTTGAAGAAGAATCTGTCTGCCCAAGCCTCCCCAACTATAGTTTTCGGCGGTTCTTATGGTGGAATGCTAGCTGCTTGGTTCCGACTGAAATATCCCCATGTAGCCATTGGGGCTGTTGCATCATCTGCGCCCATCTTGCAGTTCGATAATATTGTGCCTGAAAATACCTTCTATGACATTGTTTCAAACGATTTCAAGCAAGCAAGCGAGAGTTGTTTCAGTGTTATCAGACAATCATGGGACGATCTACAAGAG

Ace file of the UniGene biog2_v2.0_unigene12036

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1375	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	pfam05577, Peptidase_S28, Serine carboxypeptidase S28	-	-	27%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	70%
Blast2go	serine carboxypeptidase s28 family protein	-	-	75%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Serine-type carboxypeptidases.	EC:3.4.16.-	-	0.0	75%

Source	GOs	Term	Type	Identity
Blast2go	proteolysis	GO:0006508	Biological Process	75%
Blast2go	serine-type carboxypeptidase activity	GO:0004185	Molecular Function	75%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	75%
Blast2go	lysosome	GO:0005764	Cellular Component	75%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S28	IPR008758	-	-
Sma3	Hemopexin/matrixin, conserved site	IPR018486	-	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LPX2

Fln msg: Distance to subject end: 252 aas, your sequence is shorter than subject: 112 - 509

Fln protein: NSYKSTETLGYLNSQQALADYATLILDLKKNLSAQASPTIVFGGSYGGMLAAWFRLKYPHVAIGAVASSAPILQFDNIVPENTFYDIVSNDFKQASESCFSVIRQSWDDLQE

Protein Length: 113

Fln nts: AACTCTTACAAGAGCACAGAAACATTGGGATATCTTAATTCCCAGCAGGCCTTGGCAGATTATGCCACTCTCATATTAGATTTGAAGAAGAATCTGTCTGCCCAAGCCTCCCCAACTATAGTTTTCGGCGGTTCTTATGGTGGAATGCTAGCTGCTTGGTTCCGACTGAAATATCCCCATGTAGCCATTGGGGCTGTTGCATCATCTGCGCCCATCTTGCAGTTCGATAATATTGTGCCTGAAAATACCTTCTATGACATTGTTTCAAACGATTTCAAGCAAGCAAGCGAGAGTTGTTTCAGTGTTATCAGACAATCATGGGACGATCTACAAGAG

Fln Alignment:

biogeco2_mira_c8718___SYKSTETLGYLNSQQALADYATLILDLKKNLSAQASPTIVFGGSYGGMLAAWFRLKYPHVAIGAVASSAPILQFDNIVPENTFYDIVSNDFKQASESCFSVIRQSWDDLQ
B8LPX2__________________AYKDGDSLSYLTAEQALADFATLIVDLKKNLSAEACPVVLFGGSYGGMLAAWMRLKYPHIAIGALASSAPILQFEDIVPSDTFYNLVSNDFKRESENCFKVIQQSWKALE

SSRs (tot: 1)

Start position	End position	Sequence	Length
276	288	CAAG CAAG CAAG C	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain