SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene11991

Length: 1202 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog2_v2.0_unigene11991 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16842	24/24

Source	Descriptions	Term	Type	Identity
AutoFact	PHD finger/nucleic acid binding protein [Olimarabidopsis pumila]	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	71%
Blast2go	dna binding	-	-	88%

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, PHD-type	IPR001965	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NU96

Fln msg:

Fln protein: MEGAAGPYNGRTVEEVFKDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGLPSETWEVNLPAEEVPPELPEPALGINFARDGMQERIGYLW*LFTVMHGYLQWHSILVRALDLRKMTGGVFST*SMSFLRYLRW*LETVKKQTKEKPSVTNHNGNKSKPNAKVQRVSESQTKVPKLQPPHKEEEETPDEEDEEEHGDTLCGACGENYASDEFWICCDMCEIWFHGKCVKITPARAEHIKQYKCPSCSSSTKRARV*

Protein Length: 260

Fln nts: ATGGGGAGTTTGCTCTGCGCTTCTCTATTTTAGAGGGATTTTCATCCCATTCCTCCTTTCAATCGTACAAGGAAAAAAGTCGATTGACTGAGGCCGCGAGGATGAGGCATCCGTAATTCTCCTTTGTGGAATGCTTTGGAACAAGTTTTTGTCTGAGAAATTCCGCCAGAAATCGACGACGCAGGTAACCTGTTTGAAGATTTGTGGCGCAGAATCGACTCAGAAGC_-_ATGGAGGGCGCTGCTGGACCTTACAATGGCCGCACTGTCGAAGAAGTTTTCAAGGATTTCAAGGGCCGTCGAGCTGGAATGATCAAAGCCCTCACCACTGATGTGGAGGAATTTTACCAGCAATGTGATCCAGAGAAAGAGAACTTGTGTCTGTATGGCCTTCCAAGCGAAACATGGGAAGTTAATCTACCTGCTGAAGAAGTTCCACCTGAGCTTCCTGAGCCAGCTCTGGGAATTAACTTTGCAAGGGATGGAATGCAAGAAAGGATTGGCTATCTTTGGTAGCTGTTCACAGTGATGCATGGTTACTTGCAGTGGCATTCTATTTTGGTGCGCGCTTTGGATTTGAGAAAAATGACAGGAGGCGTCTTTTCAACATGATCAATGAGCTTCCTACGATATTTGAGGTGGTGACTGGAAACTGTAAAGAAGCAAACAAAAGAGAAACCAAGTGTAACCAATCACAATGGCAATAAAAGCAAACCTAATGCAAAAGTGCAGCGTGTTTCTGAATCACAGACAAAAGTACCGAAGTTGCAACCTCCACACAAGGAAGAGGAAGAGACCCCTGATGAAGAGGATGAGGAAGAGCATGGCGATACACTCTGCGGAGCCTGTGGTGAAAATTATGCCTCTGACGAGTTTTGGATCTGTTGTGACATGTGTGAGATATGGTTCCATGGTAAATGTGTGAAGATTACACCAGCAAGAGCAGAACATATTAAACAGTACAAATGCCCGTCTTGCAGTAGCAGCACTAAAAGGGCCCGAGTTTGA___GGCTGGCATATACAGTACTGTTTTTGTCTGTATTAGTCTGAGACTGATGTTTCCACATGGCCGCTTCTGGTGCGGCGACATTTATTGTGATTCACTTGCAATCAGAAGGCTTGTAAATTTGGTTTGATGCAGGTTGGGAAATTTGCCCCGGGAATGCTGTATGCAGCATATGTATAAATATTCAGTTAGCTGTTTTTA

Fln Alignment:

biogeco2_mira_c8660___MEGAAGPYNGRTVEEVFKDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGLPSETWXXXXXXXXXXXXXXXXXLGINFARDGMQERIGYLW*LFTVMHGYLQWHSILVRALDLRKMTGGVFST*SMSFLRYLRW*L---------------ETVKKQTKEKPSVTNHNGNKSKPNAKVQRVSESQTKVPKLQPPHKXXXXXXXXXXXXEHGDTLCGACGENYASDEFWICCDMCEIWFHGKCVKITPARAEHIKQYKCPSCSSSTKRAR
A9NU96__________________MEGAAGPHNGRSVEEVFKDFKGRRAGMIKALTTDVELFYQQCDPEKENLCLYGLPIETWEVNLPAEEVPPELPEPALGINFARDGMQEK---------------DWLSLVAVHSDAWLLAVAFYFGARFGFEKNDRRRLFNMINELPTIFEVVTGTVKKQTKEKSSVINHNGNKSKPNAKL-RVSESQTKVSKLPPPPKEEDDTLDEEDEEEHGDALCGACGEYYASDEFWICCDMCEVWFHGKCVKITPARAEHIKQYKCPSCSSSTKRAR

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
485		16		66	0.988813
486		16		83	0.994513
487	16			83	0.994513
576		33		66	0.997452
579	66			33	0.997452
811		20		60	0.99255
1130		25	75		0.996473
1143	25			75	0.996474

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain