SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene11982

Length: 323 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene11982
CTACTATCAAGATCTCATTCAGGCAGTTGAAGGCATGGTNACACCGGCTACTCTCCAGATTGATCAAGATCTTGCCCGTACTTTTCCAACCCACCCCTGGTTGGATACTGAAGAGGGACACGCTTCTCTGCGAAGAGTGCTTGTTGCTTACTCTTTTCGTGATTCTCGTGTTGGGTATTGTCAAGGGCTAAATTATGTTGCTGCATTGTTATTGTTAGTCATGAAAAATGAAGAGGATGCGTTTTGGATGCTGGCTGTACTTTTGGAGAATGTGTTGTTTAATGACTGCTATGCAGACAATTTGTCTGGATGCCATGTTGAAC

Ace file of the UniGene biog2_v2.0_unigene11982 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene36128	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	putative GTPase activator protein [Arabidopsis thaliana]	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	48%
Blast2go	tbc domain-containing protein	-	-	75%

Source	InterPros	Term	Type	e value	Identity
Sma3	Rab-GTPase-TBC domain	IPR000195	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PPY7

Fln msg: Distance to subject end: 156 aas, your sequence is shorter than subject: 107 - 373

Fln protein: YYQDLIQAVEGMVTPATLQIDQDLARTFPTHPWLDTEEGHASLRRVLVAYSFRDSRVGYCQGLNYVAALLLLVMKNEEDAFWMLAVLLENVLFNDCYADNLSGCHVE

Protein Length: 108

Fln nts: CTACTATCAAGATCTCATTCAGGCAGTTGAAGGCATGGTtACACCGGCTACTCTCCAGATTGATCAAGATCTTGCCCGTACTTTTCCAACCCACCCCTGGTTGGATACTGAAGAGGGACACGCTTCTCTGCGAAGAGTGCTTGTTGCTTACTCTTTTCGTGATTCTCGTGTTGGGTATTGTCAAGGGCTAAATTATGTTGCTGCATTGTTATTGTTAGTCATGAAAAATGAAGAGGATGCGTTTTGGATGCTGGCTGTACTTTTGGAGAATGTGTTGTTTAATGACTGCTATGCAGACAATTTGTCTGGATGCCATGTTGAAC

Fln Alignment:

biogeco2_mira_c8650___LQIDQDLARTFPTHPWLDTEEG--HASLRRVLVAYSFRDSRVGYCQGLNYVAALLLLVMKNEEDAFWMLAVLLENVL
C0PPY7__________________LDIIRDISRTFPSHVYFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGLLLLYM-SEEDAFWLLVALLKGAV

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain