SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene11964

Length: 373 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene11964
TGGAGCAGTACAAGGTCCAATAGAAAGGGCAGCTAACCCTCCTAGAGGAGCAAATGTCCCTACACCAGTGCATGATCTCAATGTGCCATATGAGCCAACAGAGGAATATGAAACACCTACAGCAGAGATGCTTTTTCCTCCTACACCTTTGCCGACCCCTATCCAGATCCGTTGTCAGGAATTCCAGAGCCAGTTATGTATCAGTACATGCCACAAGGTCCAAGTGACTTTACTAGTATGCCTGACTCAGGGTTGGGAGGGGATATAAAAATGGGAAGGCCTGCAGTCTATATGCAACAGCCTTCTGCTTGGATGAATCAAAGGCCACTTGGTGTTGATGTCAATATAGCTTATGAAGAAGGGAGGGATGAGG

Ace file of the UniGene biog2_v2.0_unigene11964 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10741	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Transcription factor IIA, alpha/beta subunit [Arabidopsis thaliana] ref\|NP_172228.3\| Transcription factor IIA, alpha/beta subunit [Arabidopsis thaliana] emb\|CAA11525.1\| transcription factor IIA large subunit [Arabidopsis thaliana] gb\|AAR28029.1\| TFIIA-L1	-	-	36%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	78%
Blast2go	transcription factor transcription initiation factor	-	-	60%

Source	GOs	Term	Type	Identity
Blast2go	cellular macromolecule biosynthetic process	GO:0034645	Biological Process	60%
Blast2go	gene expression	GO:0010467	Biological Process	60%
Blast2go	primary metabolic process	GO:0044238	Biological Process	60%

Source	InterPros	Term	Type	Identity
Sma3	Transcription factor IIA, alpha/beta subunit	IPR004855	-	-
Sma3	Transcription factor IIA, beta-barrel	IPR009088	-	-
Sma3	Transcription factor IIA, alpha subunit, N-terminal	IPR013028	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NX18

Fln msg: Overlapping hits, possible frame ERROR between 166 and 157, Distance to subject end: 206 aas, your sequence is shorter than subject: 124 - 398

Fln protein: GAVQGPIERAANPPRGANVPTPVHDLNVPYEPTEEYETPTAEMLFPPTPLPxxxxxPLSGIPEPVMYQYMPQGPSDFTSMPDSGLGGDIKMGRPAVYMQQPSAWMNQRPLGVDVNIAYEEGRDE

Protein Length: 125

Fln nts: TGGAGCAGTACAAGGTCCAATAGAAAGGGCAGCTAACCCTCCTAGAGGAGCAAATGTCCCTACACCAGTGCATGATCTCAATGTGCCATATGAGCCAACAGAGGAATATGAAACACCTACAGCAGAGATGCTTTTTCCTCCTACACCTTTGCCGxxxxxxxxxxxxxxxCCGTTGTCAGGAATTCCAGAGCCAGTTATGTATCAGTACATGCCACAAGGTCCAAGTGACTTTACTAGTATGCCTGACTCAGGGTTGGGAGGGGATATAAAAATGGGAAGGCCTGCAGTCTATATGCAACAGCCTTCTGCTTGGATGAATCAAAGGCCACTTGGTGTTGATGTCAATATAGCTTATGAAGAAGGGAGGGATGAGG

Fln Alignment:

biogeco2_mira_c8632___GAVQGPIERAANPP-RGANVP-TPVHDLNVXXXXXXXXXXXTAEMLFPPTPLPTxxxDPLSGIPEPVMYQYMPQGPSDFTSMPDSGLGGDIKMGRPAVYMQQPSAWMNQRPLGVDVNIAYEEGRDE
A9NX18__________________GAIQGPIDHASNSALRGANAPITPVHDLNVPYEPTEEYETPTAEMLFPPTPVQTxxxTPLPGTAEPVMYQYFPPGPGEPLATPELGIDPEAKIGRPAPYMQPPANWMSQKPLGVDVNIAYEEERDE

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain