SustainPineDB

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Assembly info
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene11957

Length: 285 nt

UniGene Fasta

>biog2_v2.0_unigene11957
AGGGAGACAGAATTGGGTAAAGTGGATAGCAATTATCACTATCCTAAGAGCCAAGCAATGAGGGTCTATTCAAGCCTCTGGAATGCAGATGATTGGGCGACGAGAGGTGGGCTCGTCAAGACGGACTGGAGCAAAGCCCCTTTTGTTGCATCCTTCCGCAACTTCAATGCTCCTGCTGCTTCTAACTTCGCAGCAGAGGAGGCTTTGGACTCGAACCAAGAGCAGAAACTCCAGTGGGTGCGAAATAACTATATGATCTATGATTACTGTGCTGACACCAAGAGG

Ace file of the UniGene biog2_v2.0_unigene11957

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene60858	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Pollen major allergen No.121 isoform 1 n=1 Tax=Cryptomeria japonica RepID=Q588C0_CRYJA	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	xyloglucan endotransglucosylase hydrolase	-	-	79%

Source	InterPros	Term	Type	Identity
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Glycoside hydrolase, family 16	IPR000757	-	-
Sma3	Glycoside hydrolase, family 16, active site	IPR008263	-	-
Sma3	Xyloglucan endotransglucosylase/hydrolase	IPR016455	-	-
Sma3	Xyloglucan endo-transglycosylase, C-terminal	IPR010713	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NQJ9

Fln msg: STOP codon was not found. Distance to subject end: 10 aas, your sequence is shorter than subject: 95 - 275

Fln protein: RETELGKVDSNYHYPKSQAMRVYSSLWNADDWATRGGLVKTDWSKAPFVASFRNFNAPAASNFAAEEALDSNQEQKLQWVRNNYMIYDYCADTKR

Protein Length: 96

Fln nts: AGGGAGACAGAATTGGGTAAAGTGGATAGCAATTATCACTATCCTAAGAGCCAAGCAATGAGGGTCTATTCAAGCCTCTGGAATGCAGATGATTGGGCGACGAGAGGTGGGCTCGTCAAGACGGACTGGAGCAAAGCCCCTTTTGTTGCATCCTTCCGCAACTTCAATGCTCCTGCTGCTTCTAACTTCGCAGCAGAGGAGGCTTTGGACTCGAACCAAGAGCAGAAACTCCAGTGGGTGCGAAATAACTATATGATCTATGATTACTGTGCTGACACCAAGAGG

Fln Alignment:

biogeco2_mira_c8625___RETELGKVDSNYHYPKSQAMRVYSSLWNADDWATRGGLVKTDWSKAPFVXXXXXXXXXXXXXXXXXXXLDSNQEQKLQWVRNNYMIYDYCADTKR
A9NQJ9__________________REKELGEVDNNYHYPKSQAMRIYSSLWNADDWATRGGLVKTDWSKAPFVASFRNFNAAISSSNFAEEALDSNQEQKLQWVRNNYMIYDYCADTKR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain