SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene11951

Length: 220 nt

UniGene Fasta

>biog2_v2.0_unigene11951
CGCAACTTTGCCACCATTCTCTTATTTGGTGCAGTTGGTACCTTTATATCTTTTATCATTGTATCGCTAGGTGCAGTCTTTATCCTACGGAAATTTGATGTTGGTTCTTTGGACATAGGGGATTACCTAGCCATTGGGACAATCTTCTCTGCCACAGATTCTGTTTGCACTCTTCAGGTTCTTAACCAGGATGAGACACCCTTGCTTTATAGTCTAGTGT

Ace file of the UniGene biog2_v2.0_unigene11951

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene390	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Sodium/hydrogen exchanger n=1 Tax=Picea sitchensis RepID=C0PSW3_PICSI	-	-	71%
FL-Next	sp=Sodium/hydrogen exchanger; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	79%
Blast2go	na+ h+ antiporter	-	-	82%

Source	GOs	Term	Type	Identity
Blast2go	transmembrane transport	GO:0055085	Biological Process	82%
Blast2go	regulation of pH	GO:0006885	Biological Process	82%
Blast2go	sodium ion transport	GO:0006814	Biological Process	82%
Blast2go	sodium:hydrogen antiporter activity	GO:0015385	Molecular Function	82%
Blast2go	integral to membrane	GO:0016021	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Sma3	Na+/H+ exchanger	IPR004709	-	-
Sma3	Cation/H+ exchanger	IPR006153	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3		IPR018406	-	-
Sma3		IPR018407	-	-
Sma3	Cation/H+ exchanger, CPA1 family	IPR018422	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PSW3

Fln msg: Distance to subject end: 361 aas, your sequence is shorter than subject: 73 - 552

Fln protein: RNFATILLFGAVGTFISFIIVSLGAVFILRKFDVGSLDIGDYLAIGTIFSATDSVCTLQVLNQDETPLLYSLV

Protein Length: 74

Fln nts: CGCAACTTTGCCACCATTCTCTTATTTGGTGCAGTTGGTACCTTTATATCTTTTATCATTGTATCGCTAGGTGCAGTCTTTATCCTACGGAAATTTGATGTTGGTTCTTTGGACATAGGGGATTACCTAGCCATTGGGACAATCTTCTCTGCCACAGATTCTGTTTGCACTCTTCAGGTTCTTAACCAGGATGAGACACCCTTGCTTTATAGTCTAGTGT

Fln Alignment:

biogeco2_mira_c8619___RNFATILLFGAVGTFISFIIVSLGAVFILRKFDVGSLDIGDYLAIGTIFSATDSVCTLQVLNQDETPLLYSLV
C0PSW3__________________RNFITIMLFGAVGTFISFSIVSAGAMLLFKKFDIGPFEIGDYLAIGTIFSATDSVCTLQILSQDETPLLYSLV

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain