SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene11943

Length: 450 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene11943
GCCTTACACACAGATTAGCCACGGATTTTGACTGTGTTCGCTAAATTCCAAGGCCCAACGGATTGCTTTAAGAATGGTTAACTAGGAAGGACTATGTACTGGAATGATAAATCCCAAAATGCAGGTTCACGTATCTCCTAACATGTCTCGAATCACCATTTCCACCACCAATGGCTTTCTGGATTTTATGAAGGTGAAGGTTGCTGCACGCCATCTATCCTACAGGACGCTCTTTTACAGCGTGCTGCTTCTGGCATTCCTCTTGCCTTTTGTATTCATTTTCACTGCTGTGATTACTCTGGATGATTTTGAGGACTGCACTTCGCTTGATTGTTTGGGAGATTAGGACCAAGGCTTTTGAGGAGGGCAAATGCTTCACCTAGAATGGCTAAAGAGATTTTTGGTGTCCTCCTCCAAGTAAACAATAAAGCGCTTCCGGAAGGAATGGTA

Ace file of the UniGene biog2_v2.0_unigene11943 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5920	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Probable galacturonosyltransferase 13 n=5 Tax=Arabidopsis RepID=GAUTD_ARATH	-	-	56%
FL-Next	sp=Probable galacturonosyltransferase 14; Arabidopsis thaliana (Mouse-ear cress).	-	-	65%
Blast2go	alpha- -galacturonosyltransferase	-	-	79%

Source	ECs	Term	Type	e value	Identity
Blast2go	Polygalacturonate 4-alpha-galacturonosyltransferase.	EC:2.4.1.43	-	0.0	79%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		0.0	79%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520		0.0	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	carbohydrate biosynthetic process	GO:0016051	Biological Process	0.0	79%
Blast2go	polygalacturonate 4-alpha-galacturonosyltransferase activity	GO:0047262	Molecular Function	0.0	79%

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycosyl transferase, family 8	IPR002495	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q8GWT1

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 421 aas, your sequence is shorter than subject: 81 - 532

Fln protein: MINPKMQVHVSPNMSRITISTTNGFLDFMKVKVAARHLSYRTLFYSVLLLAFLLPFVFIFTAVITLDDFEDCTSLDCLGD*

Protein Length: 82

Fln nts: GCCTTACACACAGATTAGCCACGGATTTTGACTGTGTTCGCTAAATTCCAAGGCCCAACGGATTGCTTTAAGAATGGTTAACTAGGAAGGACTATGTACTGGA_-_ATGATAAATCCCAAAATGCAGGTTCACGTATCTCCTAACATGTCTCGAATCACCATTTCCACCACCAATGGCTTTCTGGATTTTATGAAGGTGAAGGTTGCTGCACGCCATCTATCCTACAGGACGCTCTTTTACAGCGTGCTGCTTCTGGCATTCCTCTTGCCTTTTGTATTCATTTTCACTGCTGTGATTACTCTGGATGATTTTGAGGACTGCACTTCGCTTGATTGTTTGGGAGATTAGGACCAAGGCTTTTGAGGAGGGCAAATGCTTCACCTAGAATGGCTAAAGAGATTTTTGGTGTCCTCCTCCAAGTAAACAATAAAGCGCTTCCGGAAGGAATGGTA

Fln Alignment:

biogeco2_mira_c8608___MQVHVSPNMSRITISTTNGFLDFMKVKVAARHLSYRTXXXXXXXXXXXXXXXXXFTAVITLDDFEDCTSLDCL
Q8GWT1__________________MQLHISPSMRSITISSSNEFIDLMKIKVAARHISYRTLFHTILILAFLLPFVFILTAVVTLEGVNKCSSIDCL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain