SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene11917

Length: 275 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene11917
GTAATGATTGATGCTCATCGGCATCTTGCAAAGCCTGATCCGAGGGTAATATCTCTTGTGAAAAAGTTGGGAGAAATTGTGCAACCCAAACAAAAGCGAATCTTATGCATGAATAAGGTTGACTTAATTGAAGACAAAAGAGACTTATTAAAAGTTGCTTCCGAATTTGGACACCTTCCTGGATATGATGAATTTTACATGATATCTGGAATGAGAGGCTCTGGTGTCAAGAATCTTGTAAAATATTTAATGGATCAGGCTGTTAAGAGACCTTG

Ace file of the UniGene biog2_v2.0_unigene11917 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene20267	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	putative GTP-binding protein ERG [Oryza sativa Japonica Group]	-	-	62%
FL-Next	sp=GTP-binding protein ERG; Arabidopsis thaliana (Mouse-ear cress).	-	-	65%
Blast2go	gtp-binding protein erg	-	-	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	cytosol	GO:0005829	Cellular Component	0.0	76%

Source	InterPros	Term	Type	Identity
Sma3		IPR002917	-	-
Sma3	K Homology domain, type 2	IPR004044	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-
Sma3	GTP-binding protein Era	IPR005662	-	-
Sma3	GTP binding domain	IPR006073	-	-
Sma3	K homology domain-like, alpha/beta	IPR015946	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: O82653

Fln msg: Distance to subject end: 104 aas, your sequence is shorter than subject: 91 - 437

Fln protein: VMIDAHRHLAKPDPRVISLVKKLGEIVQPKQKRILCMNKVDLIEDKRDLLKVASEFGHLPGYDEFYMISGMRGSGVKNLVKYLMDQAVKRP

Protein Length: 92

Fln nts: GTAATGATTGATGCTCATCGGCATCTTGCAAAGCCTGATCCGAGGGTAATATCTCTTGTGAAAAAGTTGGGAGAAATTGTGCAACCCAAACAAAAGCGAATCTTATGCATGAATAAGGTTGACTTAATTGAAGACAAAAGAGACTTATTAAAAGTTGCTTCCGAATTTGGACACCTTCCTGGATATGATGAATTTTACATGATATCTGGAATGAGAGGCTCTGGTGTCAAGAATCTTGTAAAATATTTAATGGATCAGGCTGTTAAGAGACCTTG

Fln Alignment:

biogeco2_mira_c8573___VMIDAHRHLAKPDPRVISLVKKLGEIVQPKQKRILCMNKVDLIEDKRDLLKVASEFGHLPGYDEFYMISGMRGSGVKNLVKYLMDQAVKRP
O82653__________________VMFDVHRHLMSPDSRVVRLIKYMGEEENPKQKRVLCMNKVDLVEKKKDLLKVAEEFQDLPAYERYFMISGLKGSGVKDLSQYLMDQAVKKP

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain