SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene11901

Length: 154 nt

UniGene Fasta

>biog2_v2.0_unigene11901
ATGGGACGCCGGACCATTATTTTGCTCAGCACAGTCCGGAGGAAAGGTTCCCAGTCAGAAGCCAAAATGAGCTCTGCAATACTCTCAAAGGCATTCTTGCAGGTTTCTCTCAGAGATGGAACCCTGGAGGGACCTGGGATGTGCGCCCCCAAGG

Ace file of the UniGene biog2_v2.0_unigene11901

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1628	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Chorismate synthase n=1 Tax=Picea sitchensis RepID=B8LL06_PICSI	-	-	93%
FL-Next	sp=Chorismate synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	chorismate synthase	-	-	86%

Source	ECs	Term	Type	e value	Identity
Blast2go	Chorismate synthase.	EC:4.2.3.5	-	0.0	86%

Source	KEGGs	Term	Identity
Blast2go	Phenylalanine, tyrosine and tryptophan biosynthesis	00400	86%
Blast2go	Biosynthesis of phenylpropanoids	01061	86%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	86%
Blast2go	Biosynthesis of plant hormones	01070	86%
Blast2go	Metabolic pathways	01100	86%
Blast2go	Biosynthesis of secondary metabolites	01110	86%

Source	GOs	Term	Type	Identity
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	86%
Blast2go	aromatic amino acid family biosynthetic process	GO:0009073	Biological Process	86%
Blast2go	chorismate synthase activity	GO:0004107	Molecular Function	86%
Blast2go	nucleolus	GO:0005730	Cellular Component	86%
Blast2go	chloroplast	GO:0009507	Cellular Component	86%

Source	InterPros	Term	Type	e value	Identity
Sma3	Chorismate synthase	IPR000453	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LL06

Fln msg: Distance to subject end: 413 aas, your sequence is shorter than subject: 51 - 442

Fln protein: MGRRTIILLSTVRRKGSQSEAKMSSAILSKAFLQVSLRDGTLEGPGMCAPK

Protein Length: 52

Fln nts: _-_ATGGGACGCCGGACCATTATTTTGCTCAGCACAGTCCGGAGGAAAGGTTCCCAGTCAGAAGCCAAAATGAGCTCTGCAATACTCTCAAAGGCATTCTTGCAGGTTTCTCTCAGAGATGGAACCCTGGAGGGACCTGGGATGTGCGCCCCCAAGG

Fln Alignment:

biogeco2_mira_c8553___MSSAILSKAFLQVSLRDGTLEGPGMCAPK
B8LL06__________________MSSAILSKAFLQVSLKDGTLERPGMCAPK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain