SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene11886

Length: 389 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene11886
GTTTGGCAATTGTAGTGCTGGAAACTCCACAGTGGAACCATACATTGTTGGTCAACGTGTTTTGTTATCCCATGCGGTGACAGTAGAGCTTTACAGGGAGAAGTTCCAGAAGAAGCAAAAGGGCTCCATCGGCATCTCCATCTATGCAGCCTGGTTTGTACCAATGACAAACTCGTCCGAAGACAGCGCTACGACTCAAATAATCTTAGATTTCTTGTATGGCTGGATAATAGAGCCTGTTATGTATGGAGATTACCCTTCTTCTATGAGGAAGATTGTAGGCTCCACATTGCCTTCTTTCACCAAACAGGAATCCGAAAAGCTGAGGGGCTCCTTCGATTTCATTGGTCTCGTCCATTATACTACTGTTTATTGCTTCGGTATGCTCC

Ace file of the UniGene biog2_v2.0_unigene11886 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9654	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Beta-glucosidase 22 n=2 Tax=Oryza sativa RepID=BGL22_ORYSJ	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	54%
Blast2go	beta-glucosidase 11-like	-	-	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	hydrolase activity, acting on glycosyl bonds	GO:0016798	Molecular Function	0.0	69%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	0.0	69%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 1	IPR001360	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	DNA methylase, C-5 cytosine-specific, active site	IPR018117	-	-
Sma3	Glycoside hydrolase, family 1, active site	IPR018120	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ACM5

Fln msg: Distance to subject end: 164 aas, your sequence is shorter than subject: 129 - 415

Fln protein: FGNCSAGNSTVEPYIVGQRVLLSHAVTVELYREKFQKKQKGSIGISIYAAWFVPMTNSSEDSATTQIILDFLYGWIIEPVMYGDYPSSMRKIVGSTLPSFTKQESEKLRGSFDFIGLVHYTTVYCFGML

Protein Length: 130

Fln nts: GTTTGGCAATTGTAGTGCTGGAAACTCCACAGTGGAACCATACATTGTTGGTCAACGTGTTTTGTTATCCCATGCGGTGACAGTAGAGCTTTACAGGGAGAAGTTCCAGAAGAAGCAAAAGGGCTCCATCGGCATCTCCATCTATGCAGCCTGGTTTGTACCAATGACAAACTCGTCCGAAGACAGCGCTACGACTCAAATAATCTTAGATTTCTTGTATGGCTGGATAATAGAGCCTGTTATGTATGGAGATTACCCTTCTTCTATGAGGAAGATTGTAGGCTCCACATTGCCTTCTTTCACCAAACAGGAATCCGAAAAGCTGAGGGGCTCCTTCGATTTCATTGGTCTCGTCCATTATACTACTGTTTATTGCTTCGGTATGCTCC

Fln Alignment:

biogeco2_mira_c8534___GNCSAGNSTVEPYIVGQRVLLSHAVTVELYREKFQKKQKGSIGISIYAAWFVPMTNSSEDSATTQIILDFLYGWIIEPVMYGDYPSSMRKIVGSTLPSFTKQESEKLRGSFDFIGLVHYTTVY
D5ACM5__________________GRCKTGNSTIEPYLAGHYMLLSHAAAVKLYRDKYQAKQKGSIGLIILSQWYRSLTNTIQDITATQRMTDFEIGWFLDPLIYGDYPKVMRQIVGSRLPLLTEKQSREIRQSFDFIGLNHYSTNY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain