SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene11878

Length: 239 nt

UniGene Fasta

>biog2_v2.0_unigene11878
GTAAATCGGTACTTGGATCGGGTAGATGATCTCAGCAAGGACCCCAGTCTGAGTAATATACACATTACACGTGAGGAATTTGAGAACTTTGCTGAGTTGCGCAAGAAACTGAAGCCTCTATCATTGGCCATATCCAGTTATGGAAAAGTTTATGGAATCTTGACCAAGTCTGATTTTCGACGAGCAGCATCTCATGTTTGTGACGTTGACGTCACAGGCAACATGGTTGATATCATATT

Ace file of the UniGene biog2_v2.0_unigene11878

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1804	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	EF-hand, calcium binding motif-containing protein [Arabidopsis thaliana] emb\|CAA16584.1\| putative protein [Arabidopsis thaliana] emb\|CAB79924.1\| putative protein [Arabidopsis thaliana] gb\|AAL59985.1\| unknown protein [Arabidopsis thaliana] gb\|AAM67515.1\| u	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	63%
Blast2go	calcium uptake protein mitochondrial-like	-	-	79%

Source	GOs	Term	Type	Identity
Blast2go	calcium ion binding	GO:0005509	Molecular Function	79%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	79%
Blast2go	mitochondrion	GO:0005739	Cellular Component	79%
Blast2go	plastid	GO:0009536	Cellular Component	79%

Source	InterPros	Term	Type	Identity
Sma3	S100/Calbindin-D9k, conserved site	IPR001751	-	-
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D7T4Y9

Fln msg: Distance to subject end: 57 aas, your sequence is shorter than subject: 79 - 354

Fln protein: VNRYLDRVDDLSKDPSLSNIHITREEFENFAELRKKLKPLSLAISSYGKVYGILTKSDFRRAASHVCDVDVTGNMVDII

Protein Length: 80

Fln nts: GTAAATCGGTACTTGGATCGGGTAGATGATCTCAGCAAGGACCCCAGTCTGAGTAATATACACATTACACGTGAGGAATTTGAGAACTTTGCTGAGTTGCGCAAGAAACTGAAGCCTCTATCATTGGCCATATCCAGTTATGGAAAAGTTTATGGAATCTTGACCAAGTCTGATTTTCGACGAGCAGCATCTCATGTTTGTGACGTTGACGTCACAGGCAACATGGTTGATATCATATT

Fln Alignment:

biogeco2_mira_c8522___VNRYLDRVDDLSKDPSLSNIHITREEFENFAELRKKLKPLSLAISSYGKVYGILTKSDFRRAASHVCDVDVTGNMVDII
D7T4Y9__________________INKFLRRVDDLNDEPQLRDIRITLEEFKNFAELRKRLQPLSWAIFSYGKVNGQLTKGDFQRAACQVCGISLTDNVVDII

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain