SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene11872

Length: 381 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene11872
AAACAAGAATTTGTTGCCGATACTGTTCAAGGAATTGTCAAATTTGCAAAGGAATTTCTGGACCTAATTGATGCTGCAGATGCAACTGCTCAAGCTGATATTGCCAGTGAAGCTCTTAAAAGACTTGCAGCTGCAGGCTCTGTAAAGGGAGCTCTACAACTACATGAGTTGCGTGGGCTAGCACTGAGACTTGCAAATCATGGGAGTTAACACGCTTATCGGTCCTGGTAAATAATATGATTACAGCAGGCGAGGGCCGGGAGGCGGCATTTGCAGCTGCTGTGTTGGGGGATAATACTCTGATGGAAAAGGCTTGGCAGGAGACGGGGATGTATGCAGAGGCAGTGATGCATGCCCATGCACATGGTCGGCCATCACTGA

Ace file of the UniGene biog2_v2.0_unigene11872 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene27618	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Metallothio multi-domain protein	-	-	1.0e-08	27%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	88%
Blast2go	transducin wd40 domain-containing protein	-	-	0.0	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	79%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Chaperonin Cpn60/TCP-1	IPR002423	-	-
Sma3	Methionine synthase, vitamin-B12 independent	IPR002629	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6HMQ1

Fln msg: Overlapping hits, possible frame ERROR between 204 and 204, Distance to subject end: 168 aas, your sequence is shorter than subject: 127 - 1824

Fln protein: KQEFVADTVQGIVKFAKEFLDLIDAADATAQADIASEALKRLAAAGSVKGALQLHELRGLALRLANHxxLTRLSVLVNNMITAGEGREAAFAAAVLGDNTLMEKAWQETGMYAEAVMHAHAHGRPSL

Protein Length: 128

Fln nts: AAACAAGAATTTGTTGCCGATACTGTTCAAGGAATTGTCAAATTTGCAAAGGAATTTCTGGACCTAATTGATGCTGCAGATGCAACTGCTCAAGCTGATATTGCCAGTGAAGCTCTTAAAAGACTTGCAGCTGCAGGCTCTGTAAAGGGAGCTCTACAACTACATGAGTTGCGTGGGCTAGCACTGAGACTTGCAAATCATxxxxxxTTAACACGCTTATCGGTCCTGGTAAATAATATGATTACAGCAGGCGAGGGCCGGGAGGCGGCATTTGCAGCTGCTGTGTTGGGGGATAATACTCTGATGGAAAAGGCTTGGCAGGAGACGGGGATGTATGCAGAGGCAGTGATGCATGCCCATGCACATGGTCGGCCATCACTGA

Fln Alignment:

biogeco2_mira_c8513___KQEFVADTVQGIVKFAKEFXXXXXXXXXXXXXXXASEALKRLAAAGSVKGALQLHELRGLALRLANHGELTRLSVLVNNMITXXXXXXXXXXXAVLGDNTLMEKAWQETGMYAEAVMHAHAHGRPSL
F6HMQ1__________________KKENILDAVQGIVKFAKEFLDLIDAADATAQADIAREALKRLAAAGSMKGALQGHELRGLALRLANHGELTQLSGLVNNLISVGLGREAAFAAAVLGDNALMEKAWQDTGMLAEAVLHAHAHGRPTL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain