SustainPineDB

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene11855

Length: 1442 nt

UniGene Fasta

Ace file of the UniGene biog2_v2.0_unigene11855

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16546	1/39
SustainPine v2.0	sp_v2.0_unigene24781	10/39
SustainPine v2.0	sp_v2.0_unigene60309	24/39

Source	Descriptions	Term	Type	Identity
AutoFact	[O] COG5272 Ubiquitin	-	-	97%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	100%
Blast2go	ubiquitin	-	-	99%

Source	GOs	Term	Type	Identity
Blast2go	protein modification process	GO:0006464	Biological Process	99%
Blast2go	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	99%
Blast2go	response to salicylic acid stimulus	GO:0009751	Biological Process	99%
Blast2go	aging	GO:0007568	Biological Process	99%
Blast2go	intracellular part	GO:0044424	Cellular Component	99%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ubiquitin	IPR000626	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PSZ6

Fln msg: your sequence is shorter than subject: 382 - 458

Fln protein: MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGL*

Protein Length: 383

Fln nts: ACATGGGGACAGTGATTTCAATCGAGCGTTGAGGGATTTTTCATAAACACAGGCGAAGCGTTTTATTCCAGGTTTTGTTTGTAAATTTCAGAGTTCAAA_-_ATGCAGATATTCGTGAAGACATTGACCGGAAAAACCATAACTCTTGAGGTGGAGAGCTCGGACACTATTGACAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATTCCTCCTGATCAGCAGAGGCTCATCTTTGCTGGCAAACAGCTTGAGGATGGCCGAACCCTCGCAGACTATAACATTCAGAAGGAATCCACTCTTCACCTTGTCCTTCGTCTTAGAGGGGGAATGCAGATCTTTGTCAAAACCCTCACTGGCAAGACCATCACTTTGGAAGTCGAAAGCTCTGACACAATTGACAATGTGAAGGCTAAAATTCAAGACAAAGAAGGGATTCCACCCGACCAGCAGAGGCTAATCTTTGCTGGAAAACAGCTCGAGGACGGACGCACTCTCGCCGATTACAACATCCAGAAGGAATCGACTCTTCACCTTGTCCTCCGTCTCAGAGGAGGGATGCAGATCTTTGTCAAAACCCTGACCGGCAAGACAATCACTCTAGAAGTCGAAAGCTCTGATACAATTGACAATGTCAAGGCTAAAATTCAAGACAAGGAAGGGATTCCACCCGATCAGCAGAGGCTGATCTTTGCTGGGAAACAACTCGAGGATGGACGCACTCTCGCCGATTACAATATCCAGAAGGAATCGACTCTTCACCTTGTTCTCCGTCTCAGAGGAGGGATGCAGATCTTTGTCAAAACTCTCACTGGCAAGACAATCACGCTCGAAGTTGAGAGCTCAGACACTATTGATAACGTGAAGGCGAAGATTCAGGATAAAGAGGGCATTCCTCCGGATCAACAGAGATTGATCTTTGCAGGGAAACAACTTGAAGATGGGAGGACTCTAGCCGACTACAACATTCAAAAGGAATCTACACTGCATCTTGTCCTTCGTCTCCGTGGTGGTATGCAGATATTTGTGAAGACGTTGACAGGCAAGACCATAACACTGGAGGTTGAGAGCTCTGATACGATTGATAACGTGAAGGCTAAGATTCAAGACAAGGAAGGCATTCCTCCGGATCAGCAGAGGCTCATCTTTGCCGGTAAGCAGCTAGAGGATGGCCGAACCCTGGCGGATTATAACATTCAGAAGGAATCAACCCTCCACCTTGTCTTGCGTCTGCGTGGTGGCCTTTGA___GATTGCGGGGAATGTTGAAGTTATCGTTAAAGCCTTGCCCTGTAATGTCTTCAAGTATTATCGGTTTTAGATGTTGGCTTCGAATTACAGTGATAGGTACTCCTTCAAATGTTTTGTGCTTTGTTTGTCTTTGGAGTGTTATAAAGTTGTTTCTGAATGAATTAAGATTCGAATTACAGGGATAGCTATTCCTTTGT

Fln Alignment:

biogeco2_mira_c8494___MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST
C0PSZ6__________________MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain