SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene11852

Length: 323 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene11852
GTTCCTGTAGTTCGACAAGGCCAGCAAGTTCAACGTTCTGGTCCAAGGCGAACACCTTTACAACAGCTGCAGCCACCTCAACCTCCATTTCAGCAACAGATGATTCCTCGAGGAGGTCGTGTGATGCGATATCCACCTGTAAGGAATGTTCCTGAAGTTCCTTTACCAGGTGTTGGTGGAGGTATGCTGCCAGTTCCATTTGATATGAGCAGTGTTCCTATACCCGCCCCTGATGCTGGGATCTCACAATCTTCACCCATGGGAACAATGGCATCAGCTCTTGCAAATGCAACTCCTGAGCAGCAAAGGACGATGCTTGGAGA

Ace file of the UniGene biog2_v2.0_unigene11852 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene19652	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	poly(A)-binding protein [Cucumis sativus]	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	66%
Blast2go	poly -binding protein	-	-	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to salt stress	GO:0009651	Biological Process	0.0	77%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F0 complex, subunit C	IPR000454	-	-
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase	IPR001930	-	-
Sma3	Polyadenylate-binding protein/Hyperplastic disc protein	IPR002004	-	-
Sma3	Paraneoplastic encephalomyelitis antigen	IPR002343	-	-
Sma3	Transferase	IPR003480	-	-
Sma3	Polyadenylate binding protein, human types 1, 2, 3, 4	IPR006515	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	Peptidase M1, membrane alanine aminopeptidase, N-terminal	IPR014782	-	-
Sma3	Peptidase M1, puromycin-sensitive aminopeptidase	IPR015568	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A9S1

Fln msg: Distance to subject end: 75 aas, your sequence is shorter than subject: 107 - 313

Fln protein: VPVVRQGQQVQRSGPRRTPLQQLQPPQPPFQQQMIPRGGRVMRYPPVRNVPEVPLPGVGGGMLPVPFDMSSVPIPAPDAGISQSSPMGTMASALANATPEQQRTMLG

Protein Length: 108

Fln nts: GTTCCTGTAGTTCGACAAGGCCAGCAAGTTCAACGTTCTGGTCCAAGGCGAACACCTTTACAACAGCTGCAGCCACCTCAACCTCCATTTCAGCAACAGATGATTCCTCGAGGAGGTCGTGTGATGCGATATCCACCTGTAAGGAATGTTCCTGAAGTTCCTTTACCAGGTGTTGGTGGAGGTATGCTGCCAGTTCCATTTGATATGAGCAGTGTTCCTATACCCGCCCCTGATGCTGGGATCTCACAATCTTCACCCATGGGAACAATGGCATCAGCTCTTGCAAATGCAACTCCTGAGCAGCAAAGGACGATGCTTGGAGA

Fln Alignment:

biogeco2_mira_c8491___MIPRGGRVMRYPPVRNXXXXXXXXXXXXXXXXPFDMSSVPIPAPDAGISQSSPMGTMASALANATPEQQRTMLG
D5A9S1__________________MLPRGNRVYRYPPGRNVNEIPLSGVAGGMHPLPLDMGGLPLRAAETTISQPIPIGALASALANATPEQQRTMLG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain