SustainPineDB

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Assembly info
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ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene11825

Length: 357 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene11825
TTCTTGCAGAGCTGGCCAGATAAAAGAATTACTCAAATTACAAATTTTCCTCACCCATACCCTTAACTCTCTAAACTTGCAGAAAGAGATGATTAGATACAAACGTAAAGATGGGGTGCAGCTTACTGCAACCTTATATTTACCTCCTGGTTATGATGCTGCGAAGGATGGACCTCTTCCAACATTGGTATGGTCTTACCCGGGAGAATTTAAGAGTAAAGATGCAGCTAGCCAAGTGCGTGGTTCCCCAATAAATTTGCTGCAATAGGTTCAACGTCACCGCTTTTATGGTTGGTTAGAGGGTTTGCTATATTGTCTGAACCAACTATTCCAATTATTGGAGAGGGAGATGAGGAG

Ace file of the UniGene biog2_v2.0_unigene11825 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene21025	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Dipeptidyl-peptidase, putative n=1 Tax=Ricinus communis RepID=B9RNE4_RICCO	-	-	75%
FL-Next	sp=Probable glutamyl endopeptidase, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	44%
Blast2go	probable glutamyl chloroplastic-like	-	-	85%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	0.0	85%

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase S9, prolyl oligopeptidase, catalytic domain	IPR001375	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8VZF3

Fln msg: warning!, putative chimeric sequence! or repetitive structureDistance to subject end: 217 aas, your sequence is shorter than subject: 119 - 960

Fln protein: FLQSWPDKRITQITNFPHPYP*LSKLAERDD*IQT*RWGAAYCNLIFTSWL*CCEGWTSSNIGMVLPGRI*E*RCS*PSAWFPNKFAAIGSTSPLLWLVRGFAILSEPTIPIIGEGDEE

Protein Length: 120

Fln nts: TTCTTGCAGAGCTGGCCAGATAAAAGAATTACTCAAATTACAAATTTTCCTCACCCATACCCTTAACTCTCTAAACTTGCAGAAAGAGATGATTAGATACAAACGTAAAGATGGGGTGCAGCTTACTGCAACCTTATATTTACCTCCTGGTTATGATGCTGCGAAGGATGGACCTCTTCCAACATTGGTATGGTCTTACCCGGGAGAATTTAAGAGTAAAGATGCAGCTAGCCAAGTGCGTGGTTCCCCAATAAATTTGCTGCAATAGGTTCAACGTCACCGCTTTTATGGTTGGTTAGAGGGTTTGCTATATTGTCTGAACCAACTATTCCAATTATTGGAGAGGGAGATGAGGAG

Fln Alignment:

biogeco2_mira_c8461___LQSWPDKRITQITNFPHPYP*LSKLA------ERDD*IQT*RWGAAYCNLIFTSWL*CCEGWTSSNIGMV------LPGRI*E*RCS*PSAWFPNKFAAIGSTSPLLWLVRGFAILSEPTIPIIGEGDEE
Q8VZF3__________________LQLWPDRKVQQITNFPHPYPQLASLQKEMIRYQRKDGVQ------------LTATLYLPPGYDPSKDGPLPCLFWSYPGEFKSKDAAGQVRGSPNEFAGIGSTSALLWLARRFAILSGPTIPIIGEGDEE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain