SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene11805

Length: 394 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene11805
GTGTGGCTATGTACTGTACAGGGGGGATCAGATGTGAGAAAGCCACTAGTTTTCTCATGAGCAAGGGCTTTGAAGAGGTTTATCATCTAGAGGGAGGAATTTTGAAGTACTTGGAAGAAGTCCCCCCATCAGAGAGCCTTTGGGAAGGTGAATGCTTTGTATTTGACAAAAGAGTTTCAGTTGAACATGGACTGAAGCAAGGGACATATAAACTTTGTTACGCTTGTAAGAAACCTGTAAATGATGATGATGTATTGTCAGCGGATGGGAATACGGAGTTTCTTGTCCTTATTGCTACAATGCAAAGTCAGAAGAAGAGAAGGCAAGGGCAAGAGCTAGGCAACGGCAATTTGAGATGTGGGGTGTTGTAGGAGGACCTGATAAGGGTGTCCCT

Ace file of the UniGene biog2_v2.0_unigene11805 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4333	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	rhodanese like protein [Arabidopsis thaliana]	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	50%
Blast2go	upf0176 protein mfla_2319-like	-	-	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	aging	GO:0007568	Biological Process	0.0	79%
Blast2go	plastid	GO:0009536	Cellular Component	0.0	79%

Source	InterPros	Term	Type	e value	Identity
Sma3	Rhodanese-like	IPR001763	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKH7

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 48 aas, your sequence is shorter than subject: 123 - 523

Fln protein: VAMYCTGGIRCEKATSFLMSKGFEEVYHLEGGILKYLEEVPPSESLWEGECFVFDKRVSVEHGLKQGTYKLCYACKKPVNDDDVLSADGNTEFLVLIATMQSQKKRRQGQELGNGNLRCGVL*

Protein Length: 124

Fln nts: GTGTGGCTATGTACTGTACAGGGGGGATCAGATGTGAGAAAGCCACTAGTTTTCTCATGAGCAAGGGCTTTGAAGAGGTTTATCATCTAGAGGGAGGAATTTTGAAGTACTTGGAAGAAGTCCCCCCATCAGAGAGCCTTTGGGAAGGTGAATGCTTTGTATTTGACAAAAGAGTTTCAGTTGAACATGGACTGAAGCAAGGGACATATAAACTTTGTTACGCTTGTAAGAAACCTGTAAATGATGATGATGTATTGTCAGCGGATGGGAATACGGAGTTTCTTGTCCTTATTGCTACAATGCAAAGTCAGAAGAAGAGAAGGCAAGGGCAAGAGCTAGGCAACGGCAATTTGAGATGTGGGGTGTTGTAGGAGGACCTGATAAGGGTGTCCCT

Fln Alignment:

biogeco2_mira_c8436___VAMYCTGGIRCEKATSFLMSKGFEEVYHLEGGILKYLEEVPPSESLWEGECFVFDKRVSV
B8LKH7__________________IMMYCTGGIRCDVYSVILRQKGFQNLYTLKGGIAQYLKE--EGHFKWMGNLFVFDARLSV

SSRs (tot: 1)

Start position	End position	Sequence	Length
143	154	CAT CAT CAT CAT	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain