SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene11804

Length: 254 nt

UniGene Fasta

>biog2_v2.0_unigene11804
CAGCCGGCCAGCAGGTAGAGGTGGGGGTTTGTGATTTTGGATGGAACATGATGCTCTGGATGATATTATTAGGCGCCTTCTGGAAGTCCGAGGTTCGAGACCCCGGAAGCGAGTTCAAATCTCCGAGGCCGAGATTCGGCAGCTCTGCTTCGCTTCTAAACAAATCTTTATAAACCAACCCAACTTGTTGGACCTCGAAGCTCCCATCAAGATCTGTGGTGATATTCATGGACAGTATTTGGATCTCTTAAGGC

Ace file of the UniGene biog2_v2.0_unigene11804

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10469	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Serine/threonine-protein phosphatase n=1 Tax=Picea sitchensis RepID=C0PPR8_PICSI	-	-	86%
FL-Next	sp=Serine/threonine-protein phosphatase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	71%
Blast2go	serine threonine protein phosphatase pp1	-	-	91%

Source	GOs	Term	Type	Identity
Blast2go	protein dephosphorylation	GO:0006470	Biological Process	91%
Blast2go	protein serine/threonine phosphatase activity	GO:0004722	Molecular Function	91%
Blast2go	protein serine/threonine phosphatase complex	GO:0008287	Cellular Component	91%

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein S16	IPR000307	-	-
Sma3	Metallophosphoesterase domain	IPR004843	-	-
Sma3	Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase	IPR006186	-	-
Sma3	Kelch repeat type 1	IPR006652	-	-
Sma3	Kelch repeat type 2	IPR011498	-	-
Sma3	Serine/threonine protein phosphatase, BSU1	IPR012391	-	-
Sma3	Kelch-type beta propeller	IPR015915	-	-
Sma3	DNA topoisomerase, type IIA, conserved site	IPR018522	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PPR8

Fln msg: Distance to subject end: 247 aas, your sequence is shorter than subject: 71 - 318

Fln protein: MEHDALDDIIRRLLEVRGSRPRKRVQISEAEIRQLCFASKQIFINQPNLLDLEAPIKICGDIHGQYLDLLR

Protein Length: 72

Fln nts: CAGCCGGCCAGCAGGTAGAGGTGGGGGTTTGTGATTTTGG_-_ATGGAACATGATGCTCTGGATGATATTATTAGGCGCCTTCTGGAAGTCCGAGGTTCGAGACCCCGGAAGCGAGTTCAAATCTCCGAGGCCGAGATTCGGCAGCTCTGCTTCGCTTCTAAACAAATCTTTATAAACCAACCCAACTTGTTGGACCTCGAAGCTCCCATCAAGATCTGTGGTGATATTCATGGACAGTATTTGGATCTCTTAAGGC

Fln Alignment:

biogeco2_mira_c8434___MEHDALDDIIRRLLEVRGSRPRKRVQISEAEIRQLCFASKQIFINQPNLLDLEAPIKICGDIHGQYLDLLR
C0PPR8__________________METEVLDDVIGRLLEVRGSKPGKQVQLLEAEVRQLCILSKDIFMKQPNLLELEAPVKICGDVHGQYSDLLR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain