SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene11803

Length: 409 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene11803
GAGAAGACCTCTGTGTTTTCTCTGCAAGTCAAATCCCTGTCATGAGCATACAGAGGTACTTGGAAAGAATCTTCAAATATGCACACTGCAGCCCTTCCGTGTTCGTTGTAGCCTATGCTTATATAGATCGCCTTATGCTCAACCATCCTGGGCTTCGCTTAACATCACTTAACGTGCACAGGCTTCTCATCACCAGTGTCATGGTTGCTACTAAGTTTCTGGATGACTTACACTACAGGAACGCATACTATGCAAAAGTGGGAGGCTTAACAACTGAAGAAATCAACAGTCTAGAGATTGAATTTCTCTTCATGCAGCGATTCCGATTGCAGGTGACAGTTAGTGTTTTCCAGAGCTACTCCTCACATCTTGAAAGAGAGATTGCAATAGGGGGAGGGTTCCAAATAGA

Ace file of the UniGene biog2_v2.0_unigene11803 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene37285	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cyclin-U2-2 n=2 Tax=Arabidopsis RepID=CCU22_ARATH	-	-	6.0e-34	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	55%
Blast2go	nuc-1 negative regulatory protein	-	-	9.64093e-43	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	9.64093e-43	79%

Source	InterPros	Term	Type	Identity
Sma3	GNAT domain	IPR000182	-	-
Sma3		IPR006670	-	-
Sma3	Cyclin, N-terminal	IPR006671	-	-
Sma3	Cyclin P/U	IPR012389	-	-
Sma3	Cyclin PHO80-like	IPR013922	-	-
Sma3	Acyl-CoA N-acyltransferase	IPR016181	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NP68

Fln msg: Distance to subject end: 44 aas, your sequence is shorter than subject: 135 - 241

Fln protein: EDLCVFSASQIPVMSIQRYLERIFKYAHCSPSVFVVAYAYIDRLMLNHPGLRLTSLNVHRLLITSVMVATKFLDDLHYRNAYYAKVGGLTTEEINSLEIEFLFMQRFRLQVTVSVFQSYSSHLEREIAIGGGFQI

Protein Length: 136

Fln nts: GAGAAGACCTCTGTGTTTTCTCTGCAAGTCAAATCCCTGTCATGAGCATACAGAGGTACTTGGAAAGAATCTTCAAATATGCACACTGCAGCCCTTCCGTGTTCGTTGTAGCCTATGCTTATATAGATCGCCTTATGCTCAACCATCCTGGGCTTCGCTTAACATCACTTAACGTGCACAGGCTTCTCATCACCAGTGTCATGGTTGCTACTAAGTTTCTGGATGACTTACACTACAGGAACGCATACTATGCAAAAGTGGGAGGCTTAACAACTGAAGAAATCAACAGTCTAGAGATTGAATTTCTCTTCATGCAGCGATTCCGATTGCAGGTGACAGTTAGTGTTTTCCAGAGCTACTCCTCACATCTTGAAAGAGAGATTGCAATAGGGGGAGGGTTCCAAATAGA

Fln Alignment:

biogeco2_mira_c8432___LCVFSASQIPVMSIQRYLERIFKYAHCSPSVFVVAYAYIDRLMLNHPGLRLTSLNVHRLLITSVMVATKFLDDLHYRNAYYAKVGGLTTEEINSLEIEFLFMQRFRLQVTVSVFQSYSSHLEREIAIG
A9NP68__________________ITVFHGVRSPSITVAKYLERIYKYTSCSPSCFVVGYVYIDRLVHRQPDFPVISLNIHRLLLTSVMIAAKMLDDAHYNNAFYARVGGISNTELNRLEIDFLFRLGFRLKVTGKVFESYCLHLEKEMLLG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain