SustainPineDB

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Assembly info
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene11756

Length: 379 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene11756
GGAACCCATGGGCATTACAATTGCCTCTTCTTCTACATTCTGGGAGTTTCCAAGTTCAGATGTTACCATCCTGGAAGGACACACCTCTGAGGTTTTCAACTGTTCTTGGAGTCCAACAGGTTCACTTCTTGCTTCAGGATCTGGAGACTCTACAGCTCGAATTTGGACAATCCCGGATGGGCCACGCACATCTGAAACCCATAGCTGGCCTCCAAAAGCTCTTGTTTTGAAACACAATAAGCAGAGCATGGATGTGACAGTTCTTGATTGGAATGGAGAAGGGACACTACTCGCAACTGGTACTTATGATGGACAATTAAGGATTTGGAGCAAGGATGGGGAATTGAGGAACACATTTTACAAGCATAGAGGACCCATT

Ace file of the UniGene biog2_v2.0_unigene11756 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene29713	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	WD-40 repeat family protein [Arabidopsis thaliana] dbj\|BAB09017.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAL15328.1\| AT5g67320/K8K14_4 [Arabidopsis thaliana] gb\|AAN28871.1\| At5g67320/K8K14_4 [Arabidopsis thaliana] gb\|AED98328.1\| WD-40 repeat f	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	26%
Blast2go	protein	-	-	74%

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	LisH dimerisation motif	IPR006594	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	LisH dimerisation motif, subgroup	IPR013720	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NWX1

Fln msg: Distance to subject end: 155 aas, your sequence is shorter than subject: 126 - 368

Fln protein: EPMGITIASSSTFWEFPSSDVTILEGHTSEVFNCSWSPTGSLLASGSGDSTARIWTIPDGPRTSETHSWPPKALVLKHNKQSMDVTVLDWNGEGTLLATGTYDGQLRIWSKDGELRNTFYKHRGPI

Protein Length: 127

Fln nts: GGAACCCATGGGCATTACAATTGCCTCTTCTTCTACATTCTGGGAGTTTCCAAGTTCAGATGTTACCATCCTGGAAGGACACACCTCTGAGGTTTTCAACTGTTCTTGGAGTCCAACAGGTTCACTTCTTGCTTCAGGATCTGGAGACTCTACAGCTCGAATTTGGACAATCCCGGATGGGCCACGCACATCTGAAACCCATAGCTGGCCTCCAAAAGCTCTTGTTTTGAAACACAATAAGCAGAGCATGGATGTGACAGTTCTTGATTGGAATGGAGAAGGGACACTACTCGCAACTGGTACTTATGATGGACAATTAAGGATTTGGAGCAAGGATGGGGAATTGAGGAACACATTTTACAAGCATAGAGGACCCATT

Fln Alignment:

biogeco2_mira_c8367___SSSTFWEFPSSD---VTILEGHTSEVFNCSWSPTGSLLASGSGDSTARIWTIPDGPRTSETHSWPPKALVLKHNKQSMDVTVLDWNGEGTLLATGTYDGQLRIWSKDGE
A9NWX1__________________ATTAIWENVGGEFECIASLEGHENEVKSVSWSASGMLLATCGRDKSVWIWEVQPG------NEFECVSVLQGH---TQDVKMVQWHPTRDILVSASYDNSIKVWAEDGD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain