SustainPineDB

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Assembly info
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene11747

Length: 290 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene11747
CGTGCTCGTGAAGATTCATTTTGGTCACTATATCTGGATATGCTACCTTCTACATTTGGAACTCCCCTTTGGTTTACAGATGATGAGTTTTCAGAGCTCAAGGGCACTGCACTCTATCATGCAACCAAGCTGCAGACTAAAAAATTTGAAAGCTTTATTCAATGAGAGGGTGAAGCAACTTGCAGAGACATTTTTATCATATGTTGGCATGCCATGCTGTGAGATAGTCCTTTGAAGATTTTCTATGGGCAAATTCAATTATTTTGGACTCGAGCTTTAAACATTCCTGT

Ace file of the UniGene biog2_v2.0_unigene11747 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene29486	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	SET domain-containing protein [Arabidopsis thaliana] gb\|AAY25446.1\| At1g01920 [Arabidopsis thaliana] gb\|AEE27354.1\| SET domain-containing protein [Arabidopsis thaliana]	-	-	46%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	45%
Blast2go	set domain-containing protein	-	-	61%

Source	InterPros	Term	Type	e value	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	0.0	-
Sma3	SET domain	IPR001214	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D7TDU2

Fln msg: Distance to subject end: 373 aas, your sequence is shorter than subject: 96 - 565

Fln protein: RAREDSFWSLYLDMLPSTFGTPLWFTDDEFSELKGTALYHATKLQTKKFESFIQ*EGEATCRDIFIICWHAML*DSPLKIFYGQIQLFWTRALNIP

Protein Length: 97

Fln nts: CGTGCTCGTGAAGATTCATTTTGGTCACTATATCTGGATATGCTACCTTCTACATTTGGAACTCCCCTTTGGTTTACAGATGATGAGTTTTCAGAGCTCAAGGGCACTGCACTCTATCATGCAACCAAGCTGCAGACTAAAAAATTTGAAAGCTTTATTCAATGAGAGGGTGAAGCAACTTGCAGAGACATTTTTATCATATGTTGGCATGCCATGCTGTGAGATAGTCCTTTGAAGATTTTCTATGGGCAAATTCAATTATTTTGGACTCGAGCTTTAAACATTCCTGT

Fln Alignment:

biogeco2_mira_c8357___RAREDSFWSLYLDMLPSTFGTPLWFTDDEFSELKGTALYHATKLQTKKFESFIQ*EGEATCRDIFIICWHAML*DSPLKIFYGQIQLFWTRALNIP
D7TDU2__________________RLRKNSSWKPYLDMLPTTFGTPLWFIDDEFIELKGTSVHRATELQKKQLQSLYDDKVKDLVKKLLILDGDSK-GEVHFEDFLWANSIFWTRALNIP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain