SustainPineDB

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Assembly info
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene11737

Length: 361 nt

UniGene Fasta

>biog2_v2.0_unigene11737
ATCAACAAGCCATCAGCGCGGATCCTGATAATCCTCTTCTGCTTTCAAACTATGCGCAATTTCTGCATCTTGTGGCTCATGATCATGATAGAGCTGAAGAGTACTTTCAACGAGCAAAAAACTTGATCCCTCCGATGGCGAAGTCATTGGTAAATATGCACACTTTTTGTGGTTGGCTCGTGCCGATATTTCCTCTGCAGAAGAAGCGTTTCTAGATGCTATTGCAGCAGATCCTGCAAACCCTTTCACGCTGGTAGTTATGCACACTTTCTTTGGAATACTGGAGGTGAAGACACTTGTTATCCTCTTTCTTGAAGNTAACTGCATCCAGATTCCATGCATGGCCTCTGTGTGGCCAATA

Ace file of the UniGene biog2_v2.0_unigene11737

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene19342	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	PREDICTED: similar to binding n=1 Tax=Vitis vinifera RepID=UPI00019836A8	-	-	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	63%
Blast2go	tetratricopeptide repeat-containing protein	-	-	61%

Source	InterPros	Term	Type	Identity
Sma3	RNA-processing protein, HAT helix	IPR003107	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LR76

Fln msg: Separated hits, possible frame ERROR between 116 and 256, your sequence is shorter than subject: 105 - 387

Fln protein: QQAISADPDNPLLLSNYAQFLHLVAHDHDRAEEYFQRxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSYAHFLWNTGGEDTCYPLS*

Protein Length: 106

Fln nts: ATCAACAAGCCATCAGCGCGGATCCTGATAATCCTCTTCTGCTTTCAAACTATGCGCAATTTCTGCATCTTGTGGCTCATGATCATGATAGAGCTGAAGAGTACTTTCAACGAGCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTAGTTATGCACACTTTCTTTGGAATACTGGAGGTGAAGACACTTGTTATCCTCTTTCTTGAAGaTAACTGCATCCAGATTCCATGCATGGCCTCTGTGTGGCCAATA

Fln Alignment:

biogeco2_mira_c8345___QQAISADPDNPLLLSNYAQFLHLVAHDHDRAEEYFQRAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSYAHFLWNTGGED
B8LR76__________________QSMLEANPGNPLLLSNYAKFLHEVQHDMAKAEEYYGRAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSYAHFLWNSEEEE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain