SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene11723

Length: 394 nt

UniGene Fasta

>biog2_v2.0_unigene11723
AGCGTTGTTTAATAGGTTAATAAGGAGGAGAGAGGCCCTTGTGCACAACACACCTGATAGTCATATGACCCGTGATATTCGTGAAGGTGTTGCTAAATTGGGGGACTTACGATTTAAAGTAGTAGACTCGGCAGGGTTAGAGAGGGAAGCATCTTCAGGAAGTGTCCTTGCAAGAACTGCAAGGCTGACGGCAAATGTTATTGAGAGGTCTCACATGGCAATATTTCTCTTCGATGCCAGAACTGGATTACATCCATTAGATCTGGAGGTTGGAAAATGGCTACGGAAACATGCATCAAATCTTCATGTTGTCTTAGTGATGAATAAAGCTGAAGGTATTTATGATGATTCGAGCGGTACTCTGACGGCATTGTTGGGAGAAGCTCATACTTTA

Ace file of the UniGene biog2_v2.0_unigene11723

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10420	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	GTP-binding protein-like [Arabidopsis thaliana]	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	68%
Blast2go	gtp-binding protein	-	-	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	GTP binding	GO:0005525	Molecular Function	0.0	72%
Blast2go	mitochondrion	GO:0005739	Cellular Component	0.0	72%

Source	InterPros	Term	Type	Identity
Sma3		IPR002917	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-
Sma3		IPR005289	-	-
Sma3	GTP binding domain	IPR006073	-	-
Sma3	Guanylate kinase	IPR008144	-	-
Sma3	K homology domain-like, alpha/beta	IPR015946	-	-
Sma3	GTP-binding protein EngA	IPR016484	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6HAK0

Fln msg: Distance to subject end: 393 aas, your sequence is shorter than subject: 131 - 679

Fln protein: ALFNRLIRRREALVHNTPDSHMTRDIREGVAKLGDLRFKVVDSAGLEREASSGSVLARTARLTANVIERSHMAIFLFDARTGLHPLDLEVGKWLRKHASNLHVVLVMNKAEGIYDDSSGTLTALLGEAHTL

Protein Length: 132

Fln nts: AGCGTTGTTTAATAGGTTAATAAGGAGGAGAGAGGCCCTTGTGCACAACACACCTGATAGTCATATGACCCGTGATATTCGTGAAGGTGTTGCTAAATTGGGGGACTTACGATTTAAAGTAGTAGACTCGGCAGGGTTAGAGAGGGAAGCATCTTCAGGAAGTGTCCTTGCAAGAACTGCAAGGCTGACGGCAAATGTTATTGAGAGGTCTCACATGGCAATATTTCTCTTCGATGCCAGAACTGGATTACATCCATTAGATCTGGAGGTTGGAAAATGGCTACGGAAACATGCATCAAATCTTCATGTTGTCTTAGTGATGAATAAAGCTGAAGGTATTTATGATGATTCGAGCGGTACTCTGACGGCATTGTTGGGAGAAGCTCATACTTTA

Fln Alignment:

biogeco2_mira_c8329___ALFNRLIRRREALVHNTPDSHMTRDIREGVAKLGDLRFKVVDSAGLEREASSGSVLARTARLTANVIERSHMAIFLFDARTGLHPLDLEVGKWLRKHASNLHVVLVMNKAEGIYDDSSGTLTALLGEAHTL
F6HAK0__________________ALFNRLIRRREALVYNTPDDHVTRDFREGIAKLGDLRFRVLDSAGLEMAATSGSILGRTADMTANVLARSQFAIFLIDVRAGLHPMDLEVGKWLRRHAPGICTILVMNKSESL-DDGAGLLAAAAGEAYEL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain